PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13491.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 409aa    MW: 46137.4 Da    PI: 9.8574
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13491.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.6e-1272133155
         AP2   1 sgykGV..rwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV  + ++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  KHN13491.1  72 SRFRGVsrHVHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNDEEAAARAYDLAALKYWG 133
                 789***88889************888855566447************************987 PP
2AP252.31.4e-16176227155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  KHN13491.1 176 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 227
                 89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-1472143IPR016177DNA-binding domain
PfamPF008471.5E-872133IPR001471AP2/ERF domain
SMARTSM003801.2E-2073147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1373142IPR001471AP2/ERF domain
PROSITE profilePS5103218.49273141IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18176237IPR016177DNA-binding domain
CDDcd000183.95E-25176237No hitNo description
PfamPF008475.2E-12176227IPR001471AP2/ERF domain
SMARTSM003802.7E-26177241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18177236IPR001471AP2/ERF domain
PROSITE profilePS5103218.953177235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MELAPVKSEL SPRSHRLLMI DGSEVIGTKC VKRRRRDSST AVLGGNGQQG EQLEEQKQLG  60
GQSTATTVKR SSRFRGVSRH VHRWTGRFEA HLWDKGTWNP TQKKKGKQVY LGAYNDEEAA  120
ARAYDLAALK YWGISTFTNF PVSDYEKEIE IMKTVTKEEY LASLRRRSSG FSRGVSKYRG  180
VARHHHNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSTYI  240
RWLRPGTHPT ASHDQKPSTD AQPFATSNSM QARGNIEVSN SNKNSFPSGK LDSTKKRDFS  300
KYMNPLSPCN KPSSPTALGL LLKSSVFREL MQRNLNSSSE EAEEVELKYP HEGNDGVRGI  360
YDNDNTNNSY FCSSNISRLP NLESSEESPL PMYHGTVQSL WNSAFNMSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931680.0BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246909.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0B2PVX30.0A0A0B2PVX3_GLYSO; Ethylene-responsive transcription factor WRI1
STRINGGLYMA08G40831.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-69AP2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]