PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13434.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21325.2 Da    PI: 9.5326
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13434.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201257449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ++   rqvtfskRr g++KKA+ELS+LC++e+a+++fs  +k y +
  KHN13434.1 12 KDPNTRQVTFSKRRSGLFKKANELSILCGVEIAMVVFSIGNKPYSF 57
                66778*********************************98887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.03E-25176IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.833161IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRRKIEIAE VKDPNTRQVT FSKRRSGLFK KANELSILCG VEIAMVVFSI GNKPYSFGHP  60
SVDVVATKFL QQATTNSNDD AQGKNNNNPN SNEVVDGDNM ERLNQQLSNL QAQILEEEKK  120
GARHDERLKQ HEVTQVSQYA ELQGSCLELQ RKVKDNVDAI EVSECMLLLA KEPVVGVRKQ  180
MTTKKRRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17173173MEF2 CHIMERA
6byy_B1e-17173173MEF2 CHIMERA
6byy_C1e-17173173MEF2 CHIMERA
6byy_D1e-17173173MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13434.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530630.11e-138agamous-like MADS-box protein AGL29
TrEMBLA0A0B2Q0B81e-137A0A0B2Q0B8_GLYSO; Agamous-like MADS-box protein AGL61
TrEMBLK7L9G51e-137K7L9G5_SOYBN; Uncharacterized protein
STRINGGLYMA08G38880.21e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-33AGAMOUS-like 29
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]