PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN13218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 488aa MW: 53277.4 Da PI: 6.6003 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122 | 2e-38 | 122 | 181 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C ryWt+GG +rnvPvG+grrknk+ KHN13218.1 122 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCMRYWTAGGVMRNVPVGAGRRKNKNF 181 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-30 | 119 | 179 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-31 | 124 | 180 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.696 | 126 | 180 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 128 | 164 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence Send to blast |
MLVAKDSTMM KLFGNTIPAP EIPAGAPAFS SGDVFGDSVG QNRGSSSVNG DGEEHEIQQD 60 IMGEETTESK KEDEVTNLDT VSRSGEGSIN PSTEKEDLTL KTSKKTEQEQ GENSQNKTLR 120 KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCMRYW TAGGVMRNVP VGAGRRKNKN 180 FASQYRHITV PEAALSSSQP DLSNGVSNPS LNCNATLLAY GSDRPLCESM TSVLNLADKA 240 VNNSTTNGFN GSEELEIPVT YVGGEKVNDD SNKSSDTSTK PTKGETTNRS QEQVIENCHP 300 FPPHVPYFPG APWPFPWNPA PWNSLVPLPP PFFPQGFTMP LYPAAAYWSL TIPGARSIPW 360 LAQPSLLNTT VSNSGPNSLT LGKHSREENM HKSNGVAVED EHSKENNKEK CLWVPKTLRI 420 DDLGEAAKTS IWTTLGIKNN KADLFPGGGL FKSLPSQGGE KNRVIKNSPV PHANPAALSR 480 SINFQETS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN13218.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093469 | 0.0 | BT093469.1 Soybean clone JCVI-FLGm-24K11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028196123.1 | 0.0 | cyclic dof factor 2-like | ||||
TrEMBL | A0A445HBY7 | 0.0 | A0A445HBY7_GLYSO; Cyclic dof factor 2 | ||||
STRING | GLYMA13G05480.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-86 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|