PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13197.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 412aa    MW: 46396.4 Da    PI: 4.4551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13197.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-194291255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  KHN13197.1 42 RFVGVRRRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-314198No hitNo description
SMARTSM003801.1E-3542105IPR001471AP2/ERF domain
PROSITE profilePS5103219.9284299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-274298IPR001471AP2/ERF domain
PfamPF008471.0E-134291IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-194299IPR016177DNA-binding domain
PRINTSPR003678.0E-84354IPR001471AP2/ERF domain
PRINTSPR003678.0E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MARKRKVAEV VEERDLCEGT LGWDEMMKQA AALGGVQRAR KRFVGVRRRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GTNTRTNFWP CSQSSTSPAL SSKITNLLLQ  120
RLKERNNNNT CSSSSSSSTS LLINHQQMHQ QVGAYGEGST QFSIDQFTDF LNDPEDYSTS  180
NNDFINNSAQ IDYITSSFES CLTEKDGGTK IDMQYKSRNV TPQTSSNDSN SGVEDSEEEG  240
SDLGVQSTNL DVHDFKFLDN IAPPSYYSPF EMAEEMEEEP VEPENENYGD EPSMLRAVMK  300
RMTYERKFSA SLYAFNGIPE CLKLKLESGN MKGRGLADQL TSLQMACSKN ILEKNKEEKE  360
YIGTMDRRQE EEHQQTSPDM DSSSVDGELL LWNSLDLPPI CFVNLLENGS FN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-143598771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543860.10.0ethylene-responsive transcription factor ERN2
RefseqXP_028197038.10.0ethylene-responsive transcription factor ERN2-like
TrEMBLA0A445HBW00.0A0A445HBW0_GLYSO; Ethylene-responsive transcription factor ERN1
TrEMBLK7LXI90.0K7LXI9_SOYBN; Uncharacterized protein
STRINGGLYMA13G05690.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-17related to AP2 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]