PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN13129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 249aa MW: 27316.5 Da PI: 9.5803 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.9 | 1.3e-25 | 8 | 63 | 5 | 59 |
S-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 5 ynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++ rKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ KHN13129.1 8 CHCRKYGQKMGKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 63 677*********************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.1E-26 | 4 | 64 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-25 | 7 | 65 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-21 | 7 | 65 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-21 | 7 | 63 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.144 | 11 | 65 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRKYGGCHC RKYGQKMGKG NPCPRAYYRC TASPSCPVRK QVQRCAEDMS ILITTYEGTH 60 NHPLPMSAIA MACKTSATAS MLQSPSLSSQ HGLVDSAISS IINSSARYYN PNNALNFSTH 120 QVSRPQQFYF PNSSISTLNS HPTITLDLTT PPTSSSNSSF TCMPKYSSTN LNFSSGFSPL 180 HSSMPQSPWN RYSGYSNSGT LYQNRHQGGN YMLNTGNQNQ PHSLGHLNQP IYMSNNSTIS 240 QTNEVKVAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-18 | 7 | 65 | 17 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN13129.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014619828.1 | 1e-143 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028193397.1 | 1e-143 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 9e-40 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A0B2PZL9 | 0.0 | A0A0B2PZL9_GLYSO; Putative WRKY transcription factor 42 | ||||
STRING | GLYMA10G14610.2 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 2e-38 | WRKY family protein |
Publications ? help Back to Top | |||
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