PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13037.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 313aa    MW: 35168.9 Da    PI: 6.728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13037.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11143189455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ +++  L  l+P +     kK++ a++L  A++Y+k+Lq
  KHN13037.1 143 DHIIAERKRREKLSQSLIALAALIPGL-----KKMDRASVLGNAIKYVKELQ 189
                 599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-15142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14143202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-9144193No hitNo description
PfamPF000102.5E-8144189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDASEASWL SDLMLKETED CNLFRHSHLE TLLDDDDELL SHEIASAFEN LHQPLYSETF  60
ERSTKQPKTN ASSSPSSPTS KILLSFDNSS DSAALSPNQI KNKGVSVSVS LPQTRKRSSE  120
NHNFQTESPK GPRSYKSPSY ARDHIIAERK RREKLSQSLI ALAALIPGLK KMDRASVLGN  180
AIKYVKELQE RLRMLEEENK VMVNKAKLSC EDDIDGSASR EDEEGSERLP RVEARVSEKD  240
VLLRIHCQKQ KGLLLKILVE IQKFHLFVVS SSVLPFGDSI LDITIVAQME KGYNLTINDI  300
VKNLRVATLK SMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRE
2148153RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539216.10.0transcription factor bHLH25 isoform X1
RefseqXP_028189061.10.0transcription factor bHLH25-like
TrEMBLA0A0B2PZP50.0A0A0B2PZP5_GLYSO; Transcription factor bHLH25
TrEMBLK7LN100.0K7LN10_SOYBN; Uncharacterized protein
STRINGGLYMA11G04681.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3593522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-42bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]