PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13036.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 324aa    MW: 35991.4 Da    PI: 7.0489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13036.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12153200355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  Av+Y+k+Lq
  KHN13036.1 153 QEHVIAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAVKYVKQLQ 200
                 6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-13155204No hitNo description
SMARTSM003535.5E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDSFACPLDD FDFESFSGSP ESNSSYQFNS ESTPNCFPAE SPDQSFVPAR PTKRLKTFNT  60
SNTCASDIIS HKVSASSSSQ VISFDHFNAP SDASSLQFHR NLDFDVKPKI EKASSGNMDF  120
AAFVSHGSYV DKTFLSSDTN QVGITSRNPI QAQEHVIAER KRREKLSQRF IALSAILPGL  180
KKMDKASVLG DAVKYVKQLQ ERVQTLEEQA AKRTAGSRVL VKRSILFADD ENSDSHCEHS  240
LPEIEVRVSG KDVLIRTQCD KHSGHAAMIL SELEKLHFIV QSSSFLPFGN NNTDVTIIAQ  300
MNKENCMTAK DLLGRLRQAL KQFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13155209963Transcription factor MYC2
5gnj_B3e-13155209963Transcription factor MYC2
5gnj_E3e-13155209963Transcription factor MYC2
5gnj_F3e-13155209963Transcription factor MYC2
5gnj_G3e-13155209963Transcription factor MYC2
5gnj_I3e-13155209963Transcription factor MYC2
5gnj_M3e-13155209963Transcription factor MYC2
5gnj_N3e-13155209963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538782.10.0transcription factor bHLH25
RefseqXP_028188290.10.0transcription factor bHLH25-like
TrEMBLA0A0B2PUM90.0A0A0B2PUM9_GLYSO; Transcription factor bHLH25
STRINGGLYMA11G04690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-60bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]