PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13017.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 612aa    MW: 68675.6 Da    PI: 7.5699
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13017.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-16276335155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  ++  g   k ++++lg ++ +e+Aa+a++ a++k++g
  KHN13017.1 276 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDMEEKAARAYDMAALKYWG 335
                 78*******************988885566555*************************98 PP
2AP245.81.5e-14380429355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KHN13017.1 380 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 429
                 9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-12276335IPR001471AP2/ERF domain
CDDcd000181.17E-21276343No hitNo description
SuperFamilySSF541711.83E-16276345IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-16277344IPR001471AP2/ERF domain
SMARTSM003807.7E-28277349IPR001471AP2/ERF domain
PROSITE profilePS5103219.243277343IPR001471AP2/ERF domain
PRINTSPR003674.5E-6278289IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17378438IPR016177DNA-binding domain
CDDcd000181.09E-24378439No hitNo description
Gene3DG3DSA:3.30.730.104.8E-18379437IPR001471AP2/ERF domain
SMARTSM003801.2E-33379443IPR001471AP2/ERF domain
PROSITE profilePS5103219.177379437IPR001471AP2/ERF domain
PfamPF008472.6E-9380429IPR001471AP2/ERF domain
PRINTSPR003674.5E-6419439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKPIENGNTV NINYQNSWLG FSLSPQMINI GVPSHLHQTQ PSPAAVETVP PSFYHHTPLH  60
SYGSYYGLEG EHVGLSSSLP IMPLKSNVSL SGIEALSRSQ AQATITTSAM HPRLNNMLYN  120
QLLCHGLNNP NNLNHIQENI SQQQFSYYST LRNHDMILEG SKHQLPCIAE DENPGLKSWF  180
SRDFPARHGE ESRMIVPLED NNGGESGSIG SITYGDLHSL NLSVSPTSGS SCVTSSPAIT  240
NTVATDTKKR GLQMVDQNQK QIGHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK  300
KEGQGRKGRQ VYLGGYDMEE KAARAYDMAA LKYWGPSSHI NFPLENYQNE LEEMKNMTRQ  360
EYVAHLRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  420
DIAAIKFRGV NAVTNFDITR YDVERIMESN NLLSSEQAKR KREMDDGTRS EATVNQKPCT  480
TQETVLMQKR CRSQSEWKMV QYPSSQQLDQ NPQRIECSRT ESLSTALDNM FHHQVEESSN  540
MGTHLSNPSS LVTSLSSSRE ESPDKTSLPM LFGMPSTVSK LLADVDSLDL SSNLRPSLSI  600
PQMPIFAAWT DA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590619.10.0AP2-like ethylene-responsive transcription factor ANT isoform X3
RefseqXP_028188060.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
TrEMBLA0A0B2PZM50.0A0A0B2PZM5_GLYSO; AP2-like ethylene-responsive transcription factor ANT
TrEMBLK7LN220.0K7LN22_SOYBN; Uncharacterized protein
STRINGGLYMA11G04910.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-128AP2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]