PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12898.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 910aa    MW: 102852 Da    PI: 7.1996
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12898.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.15.1e-51321473118
        CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                 + k+rwl+++ei+aiL n++ +++ +++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah++++ptf rrcywl
  KHN12898.1  32 EAKSRWLRPNEIHAILCNHKYFKINAKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDKPTFVRRCYWL 130
                 459************************************************************************************************ PP

        CG-1 102 Leeelekivlvhylevk 118
                 L+++le+ivlvhy++++
  KHN12898.1 131 LDKSLEHIVLVHYRDTQ 147
                 **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.56826152IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7530147IPR005559CG-1 DNA-binding domain
PfamPF038596.7E-4632145IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.3E-5345448IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.46E-15359446IPR014756Immunoglobulin E-set
CDDcd002045.12E-14544654No hitNo description
Gene3DG3DSA:1.25.40.207.9E-14544657IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-7549624IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-16553657IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.486562627IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.259595627IPR002110Ankyrin repeat
SMARTSM002480.0058595624IPR002110Ankyrin repeat
SMARTSM00015190705727IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.723706735IPR000048IQ motif, EF-hand binding site
SMARTSM00015110758780IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.089759788IPR000048IQ motif, EF-hand binding site
SMARTSM000152.7E-4781803IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.402782806IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4783803IPR000048IQ motif, EF-hand binding site
SMARTSM000159.5860882IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078862890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MMSHNLTGQL VGAEIHGFHT LDDLDVSNTM EEAKSRWLRP NEIHAILCNH KYFKINAKPV  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKT DGKTVKEAHE HLKVGNEERI HVYYAHGQDK  120
PTFVRRCYWL LDKSLEHIVL VHYRDTQELQ LQGSPATPVN SNSSSVSDSA ASWIPSDDLD  180
SGVKSAYAVE LNDSLTAKSH EQRLHEINTL EWDDLVVSNA NTSTTSNGGN VPYSFQQNQS  240
LLNGSFGNVS SDPSAEIPSF GNLTQLVSGS DSAPYSFPES ADLLKSSPLS SGGVDTLGTL  300
VNEGLQSQDS FGTWMNIMSD TPCSIDESAL EATTSSVHVP YSSLVADNKQ SSLPEQVFNL  360
TEVSPVWASS TEKTKVLVTG YFHNNYQHLA KSNLLCVCGD VSVPVEIVQV GVYRCWVSPH  420
SPGLVTLYLS FDGHKPISKV VNFEYRTPIL HEPTALIEEK YNWDEFRLQM RLAHLLFASD  480
KSLNIFSSKV STNALKEARR FSFKTSYISK SWQHLMKSID DKTIPFSQVK DALFETSLKN  540
KLKEWLLERI ILGSKSTEYD AQGQAAIHLC AMLGYNWAIS LFTWSGLSLD FRDKFGWTAL  600
HWAAYYGIEK MVATLLSCGA RPNLVTDPTP QYPGGCTAAD LAYVKGCDGL AAYLSEKSLV  660
EQFNDMSLAG NISGSLETSS TDPVNAANLT EDQLYLKETL EAYRTAAEAA ARIQAAFREH  720
SFKLRYQAVE IMSPEEEARQ IVAAMRIQHA FRNYESKKKM AAAARIQLRF RTWKYRREFL  780
NMRRQAIKIQ AAFRGFQARK QYRKIVWSVG VLEKVILRWL LKRKGFRGLQ VNPAEEETQE  840
SDTIAEEDFF RTSRKQAEER VERSVIRVQA MFRSKKAQEE YRRMKLTHNQ AMLDELEEFL  900
NSEDDMLPKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12898.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180305.10.0calmodulin-binding transcription activator 5-like
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A445IWF60.0A0A445IWF6_GLYSO; Calmodulin-binding transcription activator 5 isoform A
STRINGGLYMA09G04310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]