PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12857.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 614aa    MW: 69254.6 Da    PI: 6.9149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12857.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.4e-27163211149
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEE CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvve 49 
                 ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v+
  KHN12857.1 163 LDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPSMVN 211
                 59********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28148211IPR003657WRKY domain
SuperFamilySSF1182902.88E-23155210IPR003657WRKY domain
PROSITE profilePS5081125.913158210IPR003657WRKY domain
SMARTSM007745.3E-28163215IPR003657WRKY domain
PfamPF031061.6E-20164210IPR003657WRKY domain
Gene3DG3DSA:2.130.10.106.4E-34355594IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.93E-32358592IPR017986WD40-repeat-containing domain
SMARTSM0032066430471IPR001680WD40 repeat
PROSITE profilePS5029415.768452565IPR017986WD40-repeat-containing domain
SMARTSM003205.8E-8474513IPR001680WD40 repeat
PfamPF004006.0E-7476513IPR001680WD40 repeat
PROSITE profilePS5008212.915481516IPR001680WD40 repeat
SMARTSM0032019517556IPR001680WD40 repeat
SMARTSM00320220562599IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MPFSDQIPNN NNSIMMTFPF QQPSTIFDLM MMPSSSSFMD LLAVQDYNVP LFDWLPAGVA  60
HHPSPSPASS NVPDSSEVLN TPASPNFSSI SSSSNEATVN NNSEQQSGKE LQEEEGGNGG  120
RGDNQDQDKT KKQLKAKKKK KKNQKKQREP RFAFMTKSEV DHLDDGYKWR KYGQKAVKNS  180
PYPRSYYRCT SAGCGVKKRV ERSSEDPSMV NSDNTTSLEA RSGKDIQGIT WKTETSDYKS  240
RDEFRRFRLE RLWIVEPRPL IVEQAKQGCQ PTLKGGIYYD YFKYNNCLMP FKQDYSPDYG  300
GMLWCTSRHD LYFCSRYKIG HLNALTSRTT EVLDVKGHVV PSKEHPGNHM HGFTKTCIEA  360
MAVGHKLLII GGNYGELICK HLNRPGVSFC FQLENEAKIN SIEIFKRPTA TSEAINFVAS  420
DQGGGVDIFD VEKTFQFSHF QFPWPVKHAS SSPDGRQLVV VGDDPEGRLV DSESGSTIQS  480
FRGHFGCSCS SAWHPDGNMF ATGNTDRTCR IWDVRNLLQP VAALEGNATA ISSISFTSDG  540
RFMAMCEDVD FVHVYDVQDA FRREQEIDLF GHVSGLSFSP DTEYLFISVS IDTVPTLLSY  600
QRRHRIYHYL DSMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21153226776Probable WRKY transcription factor 4
2lex_A1e-21153226776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136145KKKKKKNQKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195680.0EU019568.1 Glycine max WRKY26 (WRKY26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979399.10.0uncharacterized WD repeat-containing protein C2A9.03
TrEMBLA0A0B2PZ860.0A0A0B2PZ86_GLYSO; Putative WRKY transcription factor 23
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-32WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]