PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12831.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 305aa    MW: 34276.8 Da    PI: 5.8889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12831.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017202224123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  + + ++H +++
  KHN12831.1 202 FGCRKCGKPFAVRGDWRTHEKNC 224
                 56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.50.10.209.0E-15348IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
SuperFamilySSF482391.41E-101546IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
SuperFamilySSF482391.41E-10100172IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
Gene3DG3DSA:1.50.10.209.0E-15102175IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
SuperFamilySSF576671.1E-5184222No hitNo description
Gene3DG3DSA:3.30.160.607.2E-5188222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0004662Molecular FunctionCAAX-protein geranylgeranyltransferase activity
GO:0004663Molecular FunctionRab geranylgeranyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
ECHGCEIMEK DVHEKVAKDV VVSWVLCFQA HPSAKADLND GKFNGFHGSK TSQFPPYENG  60
IRKSLKFESA KLFFSVDGAL EDRDFSMLVF LFFPILKVLI HNNSQLASTY CAISILKIFG  120
CELSNLDSET IVTSMRNLQQ PDGSFIPIHT GGQTDLSIVD AAASLLLLCG GLQKQYRTPE  180
ITAKDFRTLQ THYKRKHGAK PFGCRKCGKP FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR  240
SLKDHVRAFG DGHAPHTVES CGRVGEDGLL FWLLLLGDDD DDELEVEEDD EEEDYNSNDL  300
VFGFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2PU450.0A0A0B2PU45_GLYSO; Protein TRANSPARENT TESTA 1 (Fragment)
STRINGGLYMA02G10970.26e-55(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-44C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]