PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12809.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 291aa    MW: 32380.6 Da    PI: 10.1289
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12809.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.2e-32220277359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+y+WrKYGqK++kgs++pr+YY+Cts  gCp++k+ver+ +d +++++tYegeHnh+
  KHN12809.1 220 DEYSWRKYGQKPIKGSPHPRGYYKCTSVrGCPARKHVERAVDDSNMLVVTYEGEHNHS 277
                 9*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-16171216IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-33207278IPR003657WRKY domain
PROSITE profilePS5081130.607213279IPR003657WRKY domain
SuperFamilySSF1182902.35E-27214278IPR003657WRKY domain
SMARTSM007742.8E-38218278IPR003657WRKY domain
PfamPF031065.3E-27220276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MILNQHNEGG SELEAVADVA VNRFREVISL LEKPITRTTG HARFRRAPTT VPPVPVVQLQ  60
QMVDDDSKHK LQNKTEQKQK QSTSAFKVYC PPPSPPLPQN QNHHHQQQPF ILPLHKNEAN  120
GSTTNSHFST LSGDTESLQR SCLSSGFQIS HVSMQGGSFK RKPPLSTNSV KRKCNSTGFP  180
DTKCGSSSVQ CHCSKKRKLR LKNVIRVPAI SSKTADIPPD EYSWRKYGQK PIKGSPHPRG  240
YYKCTSVRGC PARKHVERAV DDSNMLVVTY EGEHNHSQIA SEVANVILES S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20206276271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12809.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210052.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-77WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A445GB960.0A0A445GB96_GLYSO; Putative WRKY transcription factor 7
STRINGGLYMA17G35750.21e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2240024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-74WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]