PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12748.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 561aa    MW: 63120.1 Da    PI: 8.5208
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12748.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75e-191096799
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 s++++s+rl lp  f+ +++g + +s  ++l+ +sg++W+v+l   k+ +  +l  GW+ Fv +++L+ g+ +vF+++g+  f  +v+vf+k
  KHN12748.1 10 YSSAFSSHRLKLPDGFVCHMEGRTYGS--VSLTGPSGKTWTVQL--IKQENDLFLHHGWSTFVVDHQLECGELLVFRYEGHLHF--TVQVFDK 96
                4899*************8888887775..***************..999999**************************987666..9999997 PP
2B348.41.7e-15216307195
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e   +v+
  KHN12748.1 216 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECEL--RVR 307
                 556677778888899*******98996..46999***************954566666799***********************9986554..555 PP
3B350.43.9e-16441533196
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 f+k++++ +v+ s  l +p +f ++h   ++ ++++tl++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e  ++v +
  KHN12748.1 441 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVTLRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVAQCE--MHVYI 533
                 89999999***************9994..334569***************77666666799***********************987433..46655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-21299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.86497IPR003340B3 DNA binding domain
SMARTSM010192.3E-10697IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-2110102IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-161196IPR003340B3 DNA binding domain
CDDcd100171.15E-161195No hitNo description
SuperFamilySSF1019367.85E-22211309IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-20211309IPR015300DNA-binding pseudobarrel domain
CDDcd100176.82E-19214308No hitNo description
PROSITE profilePS5086312.872216312IPR003340B3 DNA binding domain
PfamPF023623.2E-12216308IPR003340B3 DNA binding domain
SMARTSM010193.3E-10216312IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-22433534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-23434535IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-19439533No hitNo description
PROSITE profilePS5086312.943441537IPR003340B3 DNA binding domain
PfamPF023621.2E-13441531IPR003340B3 DNA binding domain
SMARTSM010196.8E-13441537IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MRKPHFYEVY SSAFSSHRLK LPDGFVCHME GRTYGSVSLT GPSGKTWTVQ LIKQENDLFL  60
HHGWSTFVVD HQLECGELLV FRYEGHLHFT VQVFDKDACE KEAAFHSECS QSSKIMSTNE  120
NQELELGVGK ELLRYEIVRP ISMFRENEET SKACSANDVP VPFHMDNSKE DEETAILYRS  180
GKDDHRYILS GVSLSNVSAH DEKKVSQSFI SSFPYFVRIM KSFNVSGSYT LNIPYQFSMA  240
HLPNCKIKII LHNLKGEHWT VNSVPTTRVH TSHTLCGGWM AFVRGNNIKV GDICIFELVH  300
ECELRVRIAE VAKDGSDCQV GNLAITRPSA GHAVTSRCMP MNPKVNSKCI RKVDLSDKKW  360
SKIGQETILS IDLKKSSRAS NTSKKMGLCP QSKAAHKKLA APRRHRVDDE LSSQAKAGLR  420
MLFALDEQRV AQAFTSPFPS FVKIMKKFNV SGSYTLKIPY QFSAAHLPTY KTEVTLRNSR  480
GECWTVNSVP DAKGRTVHTF CGGWMAFVRD NDINFGDTCI FELVAQCEMH VYISGVGKEG  540
LDHQNGHLKL TNRLANVPST C
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549416.20.0B3 domain-containing protein Os01g0723500
RefseqXP_028211662.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A445GBL60.0A0A445GBL6_GLYSO; B3 domain-containing protein
TrEMBLK7MNS20.0K7MNS2_SOYBN; Uncharacterized protein
STRINGGLYMA17G36471.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-20B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]