PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12684.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 154aa    MW: 17809 Da    PI: 10.6668
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12684.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.3e-112988463
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 ++ +rkq+NRe+ArrsR RK++ ++ L   v+ L+++ +   k+++  ++++ k+++e+
  KHN12684.1 29 QRKKKRKQSNRESARRSRMRKQKHLDDLIAQVDLLKKQKSLTLKKVNITTQHCLKVEAEN 88
                5789***********************************988899999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-142690IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-82783No hitNo description
PROSITE profilePS502179.532891IPR004827Basic-leucine zipper domain
PfamPF001708.2E-82985IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-103083No hitNo description
CDDcd147021.52E-143181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000165Biological ProcessMAPK cascade
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005622Cellular Componentintracellular
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004707Molecular FunctionMAP kinase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MASSSGTSST SILLQSSGSE EDLQLLMEQR KKKRKQSNRE SARRSRMRKQ KHLDDLIAQV  60
DLLKKQKSLT LKKVNITTQH CLKVEAENSI LRAQKTELTQ SLQSLNDIIN LINTTTTFDH  120
NNYYYNNNNN NNNNNNFMHR SHQHHQRGLP HGLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKKKRKQSNRESARRSRMRKQK
24249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352569e-45AC235256.1 Glycine max strain Williams 82 clone GM_WBb0037K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209011.12e-93bZIP transcription factor 11-like
SwissprotC0Z2L56e-34BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A445GBW24e-92A0A445GBW2_GLYSO; BZIP transcription factor 44
STRINGGLYMA17G37180.15e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.14e-25G-box binding factor 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]