PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12670.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 289aa    MW: 31937 Da    PI: 5.7584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12670.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-203988255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++aa++kl+g
  KHN12670.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDAAARKLYG 88
                69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-213898No hitNo description
Gene3DG3DSA:3.30.730.106.9E-313997IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223996IPR016177DNA-binding domain
PfamPF008474.2E-143988IPR001471AP2/ERF domain
PROSITE profilePS5103222.5763996IPR001471AP2/ERF domain
SMARTSM003805.3E-3639102IPR001471AP2/ERF domain
PRINTSPR003675.1E-104051IPR001471AP2/ERF domain
PRINTSPR003675.1E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLKSGMGIQE RKKVKKPAQA SSRKGCMRGK GGPENATCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFD TAREAALAYD AAARKLYGPD AKLNLPELSV PYAAGVMNPS HMQQQQQQQQ  120
QQQPQVPQMM MQQQQPLVHP TFDLVNVTPH SDFNNNSINI LNNNPVVSSM ASSFLADAAA  180
PVYTSCDSIV SLPLSATNYT TNNTVPMEMD GYYYSSIAVE SKEDDMFRPF WGPTMDDTMP  240
VSDESIWTEA AMSLDYPIVG GGGGFGNNRT FFFGEATAWD SLQTPSFCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-184096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916ERKKVKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549447.31e-170ethylene-responsive transcription factor ERF043
RefseqXP_028210195.11e-170ethylene-responsive transcription factor ERF043-like
TrEMBLA0A445GBS71e-169A0A445GBS7_GLYSO; Dehydration-responsive element-binding protein 2D
TrEMBLK7MNY91e-169K7MNY9_SOYBN; Uncharacterized protein
STRINGGLYMA17G37350.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-42ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]