PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 524aa MW: 58188.7 Da PI: 6.3341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3e-18 | 74 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + g k r +lg+f ta eAa a+++a+k+++g KHN12554.1 74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 131 79*****998.**********855.55976666************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-13 | 74 | 131 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.80E-30 | 74 | 140 | No hit | No description |
SMART | SM00380 | 6.9E-33 | 75 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.325 | 75 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 75 | 140 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-27 | 75 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MKTNNNVSGE RKSRKRRSGE SDSVEDTLEK WKEYNRQQQL GSRENGVEVI HKVPAKGSRK 60 GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL 120 AYDEAAKAMY GPCARLNFPE PIDSNGSSSS SGSDKKSPSG SSENGGDVAI AEELEVNHRR 180 CHEDRPRFSK VGVFEKAEEM PVLSVGCVAD DSIEELKEIS NGFEQCQTSE ECKATSLNDV 240 KSEVPRENEG IEKELEEVLK NSGIGGEGRH LQKEPMDIPM NTRSNFCSSS ASSDAATILI 300 KSEETRGESV ETLNSYELSC SNHCLGYMHN NMLPDTNPRP NSETSIAKKH TEEVISEILG 360 LSHNKRLKIS HSQSPNEQYR RSEHFDEMKT RLKGLECKLR AHSIHYKNQA PIVGDSNHPS 420 MQGIHLFGGG TVGPIEGMSQ VEALNNINTN RNSLPGFSSG HGRKLCDLSQ QLHKLGGYLP 480 EQWNSMQFPD LDAGHDYSFL NPDYDFGLYE EQKLLDICFP HVGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-16 | 76 | 139 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 17 | SRKRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX440388 | 0.0 | JX440388.1 Glycine max DRE-binding protein 2D;1 (DREB2D;1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028240661.1 | 0.0 | uncharacterized protein LOC114419214 | ||||
TrEMBL | A0A0B2PXX9 | 0.0 | A0A0B2PXX9_GLYSO; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | K0GYZ0 | 0.0 | K0GYZ0_SOYBN; DRE-binding protein 2D1 | ||||
STRING | GLYMA07G19221.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13286 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 6e-33 | ERF family protein |
Publications ? help Back to Top | |||
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