PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12554.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 524aa    MW: 58188.7 Da    PI: 6.3341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12554.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1874131155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  KHN12554.1  74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 131
                 79*****998.**********855.55976666************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1374131IPR001471AP2/ERF domain
CDDcd000186.80E-3074140No hitNo description
SMARTSM003806.9E-3375145IPR001471AP2/ERF domain
PROSITE profilePS5103221.32575139IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1775140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2775140IPR001471AP2/ERF domain
PRINTSPR003672.5E-87687IPR001471AP2/ERF domain
PRINTSPR003672.5E-8105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKTNNNVSGE RKSRKRRSGE SDSVEDTLEK WKEYNRQQQL GSRENGVEVI HKVPAKGSRK  60
GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL  120
AYDEAAKAMY GPCARLNFPE PIDSNGSSSS SGSDKKSPSG SSENGGDVAI AEELEVNHRR  180
CHEDRPRFSK VGVFEKAEEM PVLSVGCVAD DSIEELKEIS NGFEQCQTSE ECKATSLNDV  240
KSEVPRENEG IEKELEEVLK NSGIGGEGRH LQKEPMDIPM NTRSNFCSSS ASSDAATILI  300
KSEETRGESV ETLNSYELSC SNHCLGYMHN NMLPDTNPRP NSETSIAKKH TEEVISEILG  360
LSHNKRLKIS HSQSPNEQYR RSEHFDEMKT RLKGLECKLR AHSIHYKNQA PIVGDSNHPS  420
MQGIHLFGGG TVGPIEGMSQ VEALNNINTN RNSLPGFSSG HGRKLCDLSQ QLHKLGGYLP  480
EQWNSMQFPD LDAGHDYSFL NPDYDFGLYE EQKLLDICFP HVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1676139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4403880.0JX440388.1 Glycine max DRE-binding protein 2D;1 (DREB2D;1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240661.10.0uncharacterized protein LOC114419214
TrEMBLA0A0B2PXX90.0A0A0B2PXX9_GLYSO; Dehydration-responsive element-binding protein 2C
TrEMBLK0GYZ00.0K0GYZ0_SOYBN; DRE-binding protein 2D1
STRINGGLYMA07G19221.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.16e-33ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]