PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN12547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 422aa MW: 48838.5 Da PI: 8.581 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 2e-14 | 10 | 101 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv +++l++g+l +p +f+++h +g+ s ++l ++g + +v+ k ++ +++++GW+eF+k +L++ fvvF+++g+s+f +v +f KHN12547.1 10 FFKVI-LESTLRKGQLKVPTSFTRRHwQGI---SNPVILSLPNGTKRKVYW--LKDGCDVWFSNGWREFAKKLRLDVSHFVVFRYEGNSCF--NVIIFG 100 55655.367788889***********8555...34599999**********..9*************************************..887776 PP S CS B3 99 k 99 k KHN12547.1 101 K 101 5 PP | |||||||
2 | B3 | 55.7 | 9.2e-18 | 204 | 295 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l+++ ++++++l+lp +f + + +k e++ tl + +grsW+v l+++ g+ ++++GW++F +n+Lk+gD++ F+l+++++f++ v+++r KHN12547.1 204 TCLIQKTYTERDLLILPMEFSKPYLHK-EGNATLFVD--DGRSWDVGLRVNH-YGQLTFSRGWRKFSLENKLKVGDVCGFELHNSEKFSFEVSIYR 295 67899999*************999555.565555555..5********7555.46799***********************9988*******9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-19 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-20 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.391 | 9 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.96E-13 | 9 | 99 | No hit | No description |
Pfam | PF02362 | 2.3E-12 | 10 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-14 | 10 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 196 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-18 | 199 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.24 | 202 | 297 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-15 | 203 | 295 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.45E-14 | 206 | 295 | No hit | No description |
SMART | SM01019 | 2.7E-15 | 207 | 297 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.16 | 320 | 412 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-8 | 340 | 410 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-9 | 346 | 409 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-11 | 349 | 410 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.305 | 356 | 412 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 422 aa Download sequence Send to blast |
MSSQGYGVHF FKVILESTLR KGQLKVPTSF TRRHWQGISN PVILSLPNGT KRKVYWLKDG 60 CDVWFSNGWR EFAKKLRLDV SHFVVFRYEG NSCFNVIIFG KSALEVEYPS SHDSNVEVEE 120 INDTDFSAKF GEDHTSKSSK KRKIIPKEEE DDDDDEPKHC KKDSGFDYSK QKNGGSSQGD 180 FKRRIKMFHE KVKEMFYAEN EHFTCLIQKT YTERDLLILP MEFSKPYLHK EGNATLFVDD 240 GRSWDVGLRV NHYGQLTFSR GWRKFSLENK LKVGDVCGFE LHNSEKFSFE VSIYRLEENS 300 STPIFKGHEQ RLSNMPSSSF RTPVTPNAST SKSKDDLCIF INEIHGRLVT LRVGCRAWQV 360 KLLCYNANSF ARFSSGWPEF ARECDLKPGD VCILKMIDVK KLVFEVSCLK GKISREENEV 420 YK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN12547.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490873.1 | 1e-133 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0B2PY97 | 0.0 | A0A0B2PY97_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA07G19395.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14023 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49475.1 | 5e-22 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|