PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12381.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 962aa    MW: 107503 Da    PI: 6.0717
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12381.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.78.9e-5391252117
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 ++e ++rwlk+ e++ iL+n+ek+++t+e +++p+sgsl+L+n++++ryfr+DG++w+kk  g+tv E+he+LKv +ve+l+cyYa++e+np fqrr+y
  KHN12381.1   9 HQEaQARWLKPAEVMYILQNHEKFQFTQEVPQQPTSGSLFLFNKRILRYFRRDGHNWRKKSGGRTVGEAHERLKVLNVEALNCYYARGEQNPAFQRRSY 107
                 677799********************************************************************************************* PP

        CG-1 100 wlLeeelekivlvhylev 117
                 w+L+ ++e+ivlvhy+++
  KHN12381.1 108 WMLDPAYEHIVLVHYRNT 125
                 ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.9755131IPR005559CG-1 DNA-binding domain
SMARTSM010768.4E-698126IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4511124IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.3E-8405493IPR013783Immunoglobulin-like fold
PfamPF018333.6E-7408481IPR002909IPT domain
CDDcd001024.08E-5408493No hitNo description
SuperFamilySSF812964.51E-18408491IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.202.8E-16603698IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.751604696IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.03E-16607698IPR020683Ankyrin repeat-containing domain
CDDcd002044.51E-14609696No hitNo description
PfamPF127961.1E-8620698IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.06637669IPR002110Ankyrin repeat
SMARTSM002480.0038637666IPR002110Ankyrin repeat
SMARTSM002481300676705IPR002110Ankyrin repeat
SMARTSM0001583754776IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.437756784IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-6795852IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152.5805827IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.84806835IPR000048IQ motif, EF-hand binding site
PfamPF006120.024808826IPR000048IQ motif, EF-hand binding site
SMARTSM000151.8E-4828850IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212829854IPR000048IQ motif, EF-hand binding site
PfamPF006122.9E-5831850IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
YEYDINDLHQ EAQARWLKPA EVMYILQNHE KFQFTQEVPQ QPTSGSLFLF NKRILRYFRR  60
DGHNWRKKSG GRTVGEAHER LKVLNVEALN CYYARGEQNP AFQRRSYWML DPAYEHIVLV  120
HYRNTSEGKL SSGAGAQLSP SSSVYTQSPS PYSTQNPGST SILGDSYEPN QSFSSPGSTK  180
VTSEIFVLNN KMGHMDWADT ESGTSSELEV TQALRRLEVQ LSLNEDNFED IVSFGSKHET  240
VHDSNPKHDQ RVISNQEQSA AFSRPDDQGL FYDGCNGRQD HGYPDANEKA LWTEQLESHK  300
SSSAVKLPQK NVYMPAENQE NSVSSARRVP VSNQENSHWL NFNCNNSENS VFSQPQGVDE  360
VKFPAYSSML ETQVINSDYY ETLFDQSQIG APPDANSSLT VAQKQKFTIK TISPEWGYAT  420
ETTKVIVVGS FLCHPSDSAW ACMFGDVEVP IEIIQDGVIS CEAPSHLPGK VTLCITSGNW  480
ESCSEVREFE YHDKTNSCTR CTQSETEATR SPEELLLLVR LGQMLLSAST IKNDNIESGI  540
PLIKPKADDD SWSHIIDALL VGSGTSSGTV DWLLEELLKD KFQQWLSFRS REKDEETGCS  600
LSKKEQGIIH MVAGLGFEWA LNPILTCGVN INFRDINGWT ALHWAARFGR EKMVASLIAS  660
GASAGAVTDP NAQDPTGKTA ASIAASSGHK GLAGYLSEIA VTSHLSSLTL EESESSKSSA  720
YLQADMTVNS VSKENLTANE DQASLKDTLA AIRNVTQAAA RIQSAFRSHS FRKRRAREAT  780
ASTGGIGTIS EISAMSKLAF RNSHEYNSAA LSIQKKYRGW KGRRDFLALR QKVVKIQAHV  840
RGYQVRKHYK VIWAVGILDK VVLRWRRKGA GLRGFRQEMD INENEDEDIL KVFRKQKLDV  900
EIEEAVSRVL SMVDSPDARE QYHRMLEKYR QAKAELAGTS DEASLSTSVG DDLFMDDFYP  960
FP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12381.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965370.0BT096537.1 Soybean clone JCVI-FLGm-10A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243457.10.0calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A445JCS80.0A0A445JCS8_GLYSO; Calmodulin-binding transcription activator 4 isoform A
STRINGGLYMA08G11080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]