PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12274.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 364aa    MW: 41403.8 Da    PI: 8.1853
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12274.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.91e-2476119144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  KHN12274.1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119
                 79***************************************987 PP
2QLQ56.86.6e-20842236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  KHN12274.1  8 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 42
                8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-15841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.36843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9876120IPR014977WRC domain
PfamPF088791.3E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNGRNRFPFT PSQWQELEHQ ALIYKYMASG ISIPPDLLFT IKRSYFDSPL SSRLLPNQPQ  60
HFGWNYLQMG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV  120
LKTTTPSSTM TTTNTNSNAS STQQAISSIT KINTLSPLAS SETHQHHPQH YGSFLYHHHP  180
PSRSSGIGLS FEDNRAPLFL DTGSCSQSNT DCRSRYVYGE KEEVDEHAFF TEPCGVMKSF  240
SASSMDDSWQ LTPLTMSSSS SSSKQRSSFG LSSDYSCLQL QSHSKQQQQE HHQDQGCYMF  300
GGGQVVKEEP QKTVHRFFDE WPHKGREGSW LDLDDKSSTT QLSISIPTCS HDFPTFSSRN  360
HHDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-122AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534945.20.0growth-regulating factor 1
RefseqXP_028179795.10.0growth-regulating factor 1-like
TrEMBLA0A0B2PX670.0A0A0B2PX67_GLYSO; Uncharacterized protein
TrEMBLA0A445IY890.0A0A445IY89_GLYSO; Growth-regulating factor 4
TrEMBLI1L1P00.0I1L1P0_SOYBN; Uncharacterized protein
STRINGGLYMA09G07990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-54growth-regulating factor 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]