PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12237.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 187aa    MW: 20971 Da    PI: 10.4737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12237.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1863113255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp++n  ++r++lg++ t+eeA  a+++a+ k++g
  KHN12237.1  63 HYRGVRRRP-WGKFAAEIRDPNKN--SARVWLGTYVTEEEAGLAYDRAAFKIHG 113
                 8********.**********9666..5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-2962123No hitNo description
Gene3DG3DSA:3.30.730.102.3E-3062122IPR001471AP2/ERF domain
PROSITE profilePS5103223.3863121IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2263122IPR016177DNA-binding domain
PfamPF008472.7E-1363113IPR001471AP2/ERF domain
SMARTSM003803.1E-3463127IPR001471AP2/ERF domain
PRINTSPR003677.7E-136475IPR001471AP2/ERF domain
PRINTSPR003677.7E-13103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAATTSCDFS SLEPLQHYLL KHGSKHLVSN GVESINDAKK LSECKRDQPR ASPEVHAPPK  60
WKHYRGVRRR PWGKFAAEIR DPNKNSARVW LGTYVTEEEA GLAYDRAAFK IHGSKAKLNF  120
PHLIGSDVSL SEPMRVVATN SHEPCLLPLE SQGSKKKKNL VDLLNRLAKN RKRVGFKSSE  180
ISAKIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2960126268ATERF1
3gcc_A2e-2960126268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520430.11e-137ethylene-responsive transcription factor 1
RefseqXP_028223795.11e-137ethylene-responsive transcription factor 1-like
TrEMBLA0A0B2PXJ61e-136A0A0B2PXJ6_GLYSO; Ethylene-responsive transcription factor 1
STRINGGLYMA03G26480.21e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]