PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN12199.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 354aa MW: 39409.5 Da PI: 5.7175

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN12199.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.1	1.9e-28	20	72	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kprl+WtpeLH+rF+ea +qLGG++kAtPk+++++m+++gLtl+h+kSHLQ + KHN12199.1 20 KPRLKWTPELHRRFIEATNQLGGEDKATPKSLMRVMGIPGLTLYHLKSHLQAF 72 79*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-26	18	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-14	19	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-19	20	72	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-6	22	70	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-21	121	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDPQNMQNQT MHFVLSTDSK PRLKWTPELH RRFIEATNQL GGEDKATPKS LMRVMGIPGL 60 TLYHLKSHLQ AFIPLLLGKS QQLETCSDNK QEDYIETKSS SDGHCSREIS LGAQNQITEN 120 MQIAQALQMQ MEVQRKLYEQ IEVQKHLQLR IEAQGKYLQS VLKKAQEALA GYNSSPVGIE 180 LTKAELSQLV TIINDACPSS PISELTETRG LSLSCGERKR DRGTMCSLES SLTSSESSGR 240 KEEKQPMEEI VEFKSSNNVS FELPLMEIHT EDKASNGGLS SNEGSGRKRS LAATESDDGS 300 CVVEQPCGKR CGNKLLRKVK LSEMLDLNSQ CQSDMDSTGS KTLDLNCSLN FWEP

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDPQNMQNQT MHFVLSTDSK PRLKWTPELH RRFIEATNQL GGEDKATPKS LMRVMGIPGL  60
TLYHLKSHLQ AFIPLLLGKS QQLETCSDNK QEDYIETKSS SDGHCSREIS LGAQNQITEN  120
MQIAQALQMQ MEVQRKLYEQ IEVQKHLQLR IEAQGKYLQS VLKKAQEALA GYNSSPVGIE  180
LTKAELSQLV TIINDACPSS PISELTETRG LSLSCGERKR DRGTMCSLES SLTSSESSGR  240
KEEKQPMEEI VEFKSSNNVS FELPLMEIHT EDKASNGGLS SNEGSGRKRS LAATESDDGS  300
CVVEQPCGKR CGNKLLRKVK LSEMLDLNSQ CQSDMDSTGS KTLDLNCSLN FWEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-18	20	72	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-18	20	72	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-18	20	72	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-18	20	72	1	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-18	20	72	2	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN12199.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235379	0.0	AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520080.1	0.0	myb family transcription factor PHL8 isoform X1
Refseq	XP_028202441.1	0.0	myb family transcription factor PHL8-like isoform X1
Swissprot	F4I274	8e-73	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A0B2PWW9	0.0	A0A0B2PWW9_GLYSO; Myb family transcription factor APL
STRING	GLYMA02G12070.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-72	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]