PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12117.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 261aa    MW: 29214.5 Da    PI: 7.2747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12117.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021104126123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C + F ++  L  H++ H
  KHN12117.1 104 FSCNYCQRKFYSSQALGGHQNAH 126
                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-6101131No hitNo description
PROSITE profilePS5015711.427104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDLQRQESCP SENLNIITFS DTVPCQNPEP SINTQTKTNQ TQTEDQKHPH DSVPRVLLDL  60
SLSNKDSSDD DSKSELNLLN CFHTNFSENT SESSQGNELD PRVFSCNYCQ RKFYSSQALG  120
GHQNAHKRER TLARRGYKAG VADFGHTYSN MHFLPSHDLY NKALGIQVHS MINKPSYQTP  180
IFGPCHSIGW QRQPLDAQPA IGNFRVGAET ESSLADSVPK LGKFSTRLVT EGFGGYCFGS  240
ITNLKSKQQE KLQKLDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240664.10.0zinc finger protein 1-like
TrEMBLA0A0B2PX290.0A0A0B2PX29_GLYSO; Zinc finger protein 3
STRINGGLYMA07G02880.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-31zinc finger protein 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]