PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12001.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 584aa    MW: 64574 Da    PI: 7.5862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12001.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.15.6e-17364410455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++ +L++l+P++      K +Ka++Le+A+eY+ksLq
  KHN12001.1 364 VHNQSERRRRDRINEKMRTLQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 410
                 6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.12E-18356414No hitNo description
Gene3DG3DSA:4.10.280.101.9E-18357417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-20357423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.368360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-14364410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MKNSIPGLDF ESDACLTNQR KLIGPDQELV QLLWQNGQVV RHNQTYRKPL GNSSNLRQAQ  60
KTDHSTLRSS GPYGNSSNLD QEEATPWIQF PLEDPLEQDF CSNLLSELPP TCEFESYKPI  120
KQLEEDKFTN FFASSTPHHP TTSSSKPLPP NMTSSWVQRI QGNPNPMPAP RFHVPDSSQK  180
DNDLGASRKV LNFPHFSTPR NNVSSAPGST QFREKTTANL SQSEAREDSV ITVGSSHCGS  240
SRIPQEQDVS RVSSSGVWAT NNNNSLSAEP EAVRDCVQRP ICPRSDKGKS EMIEPTVTSS  300
SGGSGSTGIG RTCSLSTRDH GQKRKGTEEE ASEEQSEATE LKSADGNKAS QRTGSSKRNR  360
AAEVHNQSER RRRDRINEKM RTLQQLIPNS NKTDKASMLE EAIEYLKSLQ FQLQVMWMGS  420
GMTPVMFPGI QHYMSQMGMG MGAPSLPSIY NPMQLPKVPH DQAMSVPQMP NQNLMCQNQV  480
LGAFNYQNHM QNPCLPEQYA PYMGYHFMRS ASQPMNVFRY GSQAVQHSQT MIAPGNNSSG  540
PMSGTANIDD AVSGKAGKSL IVGQACNQLL YGTHQVQAFH VLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198816.10.0transcription factor PIF5-like
TrEMBLA0A445H0W20.0A0A445H0W2_GLYSO; Transcription factor PIF4 isoform A
STRINGGLYMA14G03600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.41e-37phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]