PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 35026 Da PI: 6.2994 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.2 | 6.1e-11 | 257 | 306 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 + +W+ E+e l +vk++G g+W++I + ++R++ ++k++w++ KHN11870.1 257 KRKWSSLEEETLRAGVKMFGEGNWASIRSFYSnvfENRSGVDLKDKWRNM 306 569*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 251 | 308 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.691 | 252 | 308 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-15 | 253 | 307 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-6 | 256 | 308 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-9 | 257 | 306 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.82E-18 | 258 | 308 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKEVRVFLKE AWGAMGPSFL ETVAAKEKNK DEGARDNDDN DNICDDHDDG ACMEDVAMHG 60 ENQEPLEESV DANQEVGGFD LSPRRDEAIP KRNSQLKHKH SAFRASHRGR GVEISSPKEV 120 KATKSWSKHD PVPSAEVKKV RESLKSSSLE LRALVKDPLP HALHISDVVR SKLATSDTKT 180 EPLIENQHED VEVQDPDVCQ SIVPFQPNDV NLGKKSFVHC SNIHQPYLME QNISARTFEW 240 EDSVDNSPQA RQPRRRKRKW SSLEEETLRA GVKMFGEGNW ASIRSFYSNV FENRSGVDLK 300 DKWRNMIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 252 | 256 | PRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028191605.1 | 0.0 | uncharacterized protein LOC114377338 | ||||
Refseq | XP_028191606.1 | 0.0 | uncharacterized protein LOC114377338 | ||||
TrEMBL | A0A0B2PS53 | 0.0 | A0A0B2PS53_GLYSO; Telomeric repeat-binding factor 1 | ||||
TrEMBL | A0A445I4D0 | 0.0 | A0A445I4D0_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA11G30814.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2824 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49850.1 | 2e-09 | telomere repeat binding factor 3 |
Publications ? help Back to Top | |||
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