PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11866.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 399aa    MW: 44130.4 Da    PI: 8.7687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11866.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16237283455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRd+iN+++ eL++l+P++      K +Ka++L ++++Y+k+Lq
  KHN11866.1 237 VHNQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 283
                 6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.955233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-19236302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-14237283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18238290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-16238287No hitNo description
SMARTSM003531.8E-18239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSQRVPNCDV DDSNIPTASK FPLPNFNFIS HEVPMLGYQV GELPCKKGQP STYEGSNGNL  60
TTWDKPRTSG GTLESIVNQH VSENCYKLVA MDALVPCSKQ GTRKAVESGR LGACRESSST  120
RVASRARVAA QEEVGKRAGM VARLPTTLEL SGCKDWSVSG SETCRRELSV TFNSATTGSP  180
ENTTSAGRQC TGTTTNDDRD SISHLISQSE VPDEDYMAAK VERSSGSNKR IKANSVVHNQ  240
SERRRRDKIN QRMKELQKLV PNSSKTDKAS MLDEVIQYMK QLQAQVQMMN WMKMYTTMML  300
PITMQQQQQQ LKMSMMMAQM GMGMGMGMGM NKDMVMNMNS MNIPGIPPML PFPPFMPMVS  360
CGDQLQGTPE KSVTMDAYSK MASLYDQQLF HPPASSSKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246ERRRRD
2242247RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311000.0KT031100.1 Glycine max clone HN_CCL_212 bHLH transcription factor (Glyma03g04000.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237828.10.0transcription factor UNE10-like
TrEMBLA0A0B2PR580.0A0A0B2PR58_GLYSO; Transcription factor UNE10
STRINGGLYMA03G04000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-42bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]