PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11842.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 328aa    MW: 36505.7 Da    PI: 9.294
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11842.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC45.21.6e-1466106145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++ +++    rH+ r r rsrk++e+
  KHN11842.1  66 DPEPGRCRRTDGKKWRCSRDAHPDS----RHMIRRRYRSRKPVES 106
                 79**********************8....8************997 PP
2QLQ57.83.3e-201247237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k
  KHN11842.1 12 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 47
                9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-121147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-151246IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.6931247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166716.08766111IPR014977WRC domain
PfamPF088791.8E-1167105IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSVPPPSTMW TPFTAAQWHE LEHQALIFKY LKAGLSVPPD LLLPIRKSLQ LISSHPSMGY  60
YGKKIDPEPG RCRRTDGKKW RCSRDAHPDS RHMIRRRYRS RKPVESSQTH SSSSASAASS  120
NSNPVAGGGS VANVSATAAK NLHTLPLHIN GAREGFTFTL GNNTSTNTNT NTNTLPHLHM  180
NPLTLSADNT KKTYRFGLNS EADEHNVLQK DLGSVRYQGY DFTSDAMWSQ MSHIPSNTVS  240
ESRIGSTMLG NCFQHQTMRD AELLNLETAR TKDLVFSGQL SSAGGMKQEY QSPQSLFSDW  300
DWKKDLSSSA LEYRPNKDFN CNPDVNVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-148AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247418.10.0growth-regulating factor 3-like
TrEMBLA0A445J4380.0A0A445J438_GLYSO; Growth-regulating factor 3
STRINGGLYMA09G34565.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149481112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-30growth-regulating factor 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]