PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37756.6 Da PI: 7.6128 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.8 | 3.7e-48 | 7 | 125 | 1 | 118 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++ ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k KHN11660.1 7 VPPGFRFHPTDEELVDYYLRKKIASRRIDL-DVIKDVDLYKIEPWDLQEicRIGAeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-K 103 69****************************.9***************954555442556**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgek 118 +el+g++ktLvfykgrap+g+k KHN11660.1 104 HELIGMRKTLVFYKGRAPNGQK 125 99******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-48 | 5 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.453 | 7 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-22 | 8 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MNTFTHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DVDLYKIEPW DLQEICRIGA 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHELIGMR KTLVFYKGRA 120 PNGQKVFKKR VTTMRKVSEH DSSCWYDEQV SFMQDLDSPK QTCQSNLVYQ QLPYPCKKEL 180 DLPPYQLPRD HFLQLPLLES PKLLQSASAI APINNPMEGY VLDHVNHSTS LLPPSLIQQE 240 HVGQQNFQAT YGNINNSNEQ AVDPVTDWRV LDKFVASQLS QDASKENIFQ GTDNSSVQFR 300 HLDKQKLVVP EQNASTSNSS CPIDLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-41 | 6 | 126 | 14 | 131 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB599937 | 1e-109 | AB599937.1 Populus trichocarpa PtVNS06 mRNA for transcription factor, complete cds. | |||
GenBank | HQ215852 | 1e-109 | HQ215852.1 Populus trichocarpa wood-associated NAC domain transcription factor 3B (WND3B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006587710.1 | 0.0 | NAC domain-containing protein 7 | ||||
Refseq | XP_028180306.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-113 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A445J4Z5 | 0.0 | A0A445J4Z5_GLYSO; NAC domain-containing protein 7 | ||||
TrEMBL | I1L5Q5 | 0.0 | I1L5Q5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G36600.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-96 | NAC 007 |
Publications ? help Back to Top | |||
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