PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11644.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 359aa    MW: 41293 Da    PI: 7.9558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11644.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37.1e-5491381129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + +
  KHN11644.1   9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-S 105
                 69****************************.99**************963433332556*************************************9.8 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++g++ktLvfykgrap+g+ktdW+mheyrle
  KHN11644.1 106 YKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
                 999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-608160IPR003441NAC domain
PROSITE profilePS5100558.0729160IPR003441NAC domain
PfamPF023655.2E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGSSTNGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMDV IREVDLNKME PWDLQERCRI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG  120
RAPHGQKTDW IMHEYRLEDG NDPQGSANED GWVVCRVFKK KNLFKIENEG GSTHKPDHQI  180
NNSSNTNARS YRENHYLLHQ QQNPRNSSGL ELDKPELALH YPPPHLQNPP YSLFQSQPLL  240
QTQKPMVYDY SYTSDTPIMA KQLMTNPRDC ESGSDGLRYQ VSESGMEVGS CEPNQEMGTG  300
RGEGINEWGV LDRLVTSHLA GNEDSSKGVR FEEANPQSVH QINQLSLRGE MDFWAYGKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-53516216170NAC domain-containing protein 19
3swm_B4e-53516216170NAC domain-containing protein 19
3swm_C4e-53516216170NAC domain-containing protein 19
3swm_D4e-53516216170NAC domain-containing protein 19
3swp_A4e-53516216170NAC domain-containing protein 19
3swp_B4e-53516216170NAC domain-containing protein 19
3swp_C4e-53516216170NAC domain-containing protein 19
3swp_D4e-53516216170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-130AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533525.10.0protein BEARSKIN2
RefseqXP_028180478.10.0protein BEARSKIN2-like
SwissprotQ9SV871e-149BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0R0IIZ50.0A0A0R0IIZ5_SOYBN; Uncharacterized protein
TrEMBLA0A445J5740.0A0A445J574_GLYSO; Protein BEARSKIN2
STRINGGLYMA09G36820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-151NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]