PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 285aa MW: 33026.1 Da PI: 10.0771 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.4e-16 | 18 | 97 | 2 | 88 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 fk+ + s+v ++ +p+kf++++gg s + l+ +++++Wev +k g+++++kGWkeFv+ L+ g fv+Fk++g+s KHN11484.1 18 FKTILESNVE---WMKIPNKFTRRYGGG--LSNPVFLRPPDSKEWEVHW--TKENGEVWFQKGWKEFVEYYSLEHGHFVLFKYNGTS 97 5555444444...789*********877..5667***************..*******************************98843 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.267 | 14 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-22 | 15 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-17 | 16 | 105 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-22 | 16 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.4E-13 | 17 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-13 | 24 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.247 | 159 | 256 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-6 | 205 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-5 | 205 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MATPPLVQRK ASLPIHFFKT ILESNVEWMK IPNKFTRRYG GGLSNPVFLR PPDSKEWEVH 60 WTKENGEVWF QKGWKEFVEY YSLEHGHFVL FKYNGTSLID VLILDRSAIE IDDEMGTVDP 120 NVEKLHADKG VRSDHHQTKV RVRPRSPLVS SEPRNKMPSE KAIERTSSLN TPKLLRAKKV 180 ARNFVSNNVF FTVVITRPQL EEGAWSWSVK LPNCRTISCG WCLFARENVL QIRNVCIFEL 240 ISTKDAVFKV PCFQKSNLIH TLVGAFSSWR ILNKYHFPLE WGKSP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11484.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628020.1 | 1e-115 | B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A445F3B9 | 1e-151 | A0A445F3B9_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA20G24256.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 5e-19 | B3 family protein |
Publications ? help Back to Top | |||
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