PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 28444.3 Da PI: 6.0472 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.4 | 4.6e-12 | 23 | 80 | 36 | 97 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 le + g++W+v+ +k+ g+++++kGWkeFv+ L+ g + Fk++g+s+ v ++ KHN11482.1 23 TNLERLYGNEWKVNW--TKQNGEVWFEKGWKEFVEHYSLDHGHLIFFKYEGTSQI--DVLIL 80 5788999********..********************************997665..56665 PP | |||||||
2 | B3 | 43.7 | 5e-14 | 155 | 242 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ff+v++++ + + grl lp ++ + ++ ++k l+ ++ rsW+vkl +++ l++GW +F+++ +L+ gD++vF+l++r++ ++v+vf++ KHN11482.1 155 FFTVFIKPVHVADGRLPLP--DLKGIIEN--KEKYLK-LQLGERSWNVKL--LNNR----LSAGWTSFASESELQPGDVCVFELINREDSVFKVHVFKR 242 6777777777777755555..44444333..333455.34677*******..9999....9************************99888899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.378 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.031 | 16 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-14 | 21 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-14 | 22 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-9 | 23 | 74 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.30E-9 | 25 | 81 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-14 | 152 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-14 | 153 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-12 | 154 | 241 | No hit | No description |
PROSITE profile | PS50863 | 11.152 | 155 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-11 | 155 | 242 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-9 | 155 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAHRPGRDA TLPILFFKII LKTNLERLYG NEWKVNWTKQ NGEVWFEKGW KEFVEHYSLD 60 HGHLIFFKYE GTSQIDVLIL DQSALEIDYL CDTCDENETL DHTHEAPNTI FGEWPDQKAE 120 KMRGEEPIER TSSLNMPTQS RAKEVARNFI SYNPFFTVFI KPVHVADGRL PLPDLKGIIE 180 NKEKYLKLQL GERSWNVKLL NNRLSAGWTS FASESELQPG DVCVFELINR EDSVFKVHVF 240 KRHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-14 | 125 | 241 | 18 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-14 | 125 | 241 | 18 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11482.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028220427.1 | 1e-146 | B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A445F3J6 | 1e-174 | A0A445F3J6_GLYSO; Putative B3 domain-containing protein | ||||
STRING | GLYMA20G24268.1 | 1e-172 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-16 | B3 family protein |
Publications ? help Back to Top | |||
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