PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11420.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 417aa    MW: 46677.1 Da    PI: 5.6756
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11420.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box261.9e-081760340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ +  k+++++C  ++ +lC+ C ++ H        H++v
  KHN11420.1 17 ARACDGCITKRARWYCAADDAFLCQACDSSVHLAnplarrHERV 60
                578*****************************444666667766 PP
2CCT68.12.4e-23362405144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  KHN11420.1 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 405
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-91562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6651562IPR000315B-box-type zinc finger
PfamPF006431.6E-61760IPR000315B-box-type zinc finger
CDDcd000217.17E-91862No hitNo description
PROSITE profilePS5101716.083362404IPR010402CCT domain
PfamPF062036.9E-18362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSSATKNAAN AVGGKTARAC DGCITKRARW YCAADDAFLC QACDSSVHLA NPLARRHERV  60
RLKTASYKST DERRQPPTWH TKKPRTPRHG KHSRNNNPFH LVPEEGSEEA NSHDENEEQL  120
VYRVPIVDPF VAELCGTNSS PSSVTSTDQG VVAAAAASAE VEYKGIQSND FCSNSNEIEN  180
LHGMLPSDAE LAEFAADVES FLGRGLENKC VGMEELGLVD TKEEECSVGS GKVKVEEEES  240
PLMEMDMGRD DQSFELSFDY ETCEEVKEMK VSDLELGNEL GEMKENDDDE VKRKKVSLQL  300
DYEAIIIAWA SQKSPWTTAD KQNLDPDECW HQCMGSCGTA FHHPYGELGG FGIHSVIVDG  360
GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRASFAPP TFPLLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689040.0HM068904.1 Glycine max CONSTANS-like zinc finger protein (COL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219641.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3Q7YU130.0A0A3Q7YU13_SOYBN; CONSTANS-like zinc finger protein
TrEMBLA0A445F3R50.0A0A445F3R5_GLYSO; Zinc finger protein CONSTANS-LIKE 16
STRINGGLYMA20G24940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.17e-99B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]