PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN11362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 413aa MW: 45902.9 Da PI: 8.1033 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.1 | 1.3e-31 | 90 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l+ KHN11362.1 90 FEKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDlYRHRLY 188 99****************************66677899*************************************************766887888888 PP EEEE-S CS B3 94 vkvfrk 99 + ++++ KHN11362.1 189 IDWRKR 194 888776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 81 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-29 | 88 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.01E-27 | 89 | 177 | No hit | No description |
SMART | SM01019 | 3.2E-24 | 90 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-29 | 90 | 194 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.325 | 90 | 195 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 413 aa Download sequence Send to blast |
MELMQQVKGN YSDSREEEEA AAEIITITRE PESSRLHQQD AASNFGKKLD LMDLSLGSSK 60 EEEEGKLQQG GGGGGVVHHA HEIVEKENMF EKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS 120 SSNEKGLLLN FEDRNGKVWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGLG 180 DLYRHRLYID WRKRSAHPHA HHHAPDPLFL PSIRWYSLPP TMPPRYHHDH HFHHHLNYNN 240 LFTFQQHQYQ LGAATAAATA AHHGDQNSGS GSLYYLRSSM SMGGGDQNLQ GRGNNIVPMI 300 IDSVPVSVGH HNNRHGNGGI TSGGATSSGK RLRLFGVNME CASSAEDSKG LSSGSAAHVT 360 TAASSSLHQR LRLPLPHEDP LSSSSARFGD HKGGSTGTSL LFDLDPSLQY HRQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-61 | 83 | 194 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-61 | 83 | 194 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN11362.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-152 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553806.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Refseq | XP_006604926.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Refseq | XP_014627638.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Refseq | XP_014627639.1 | 0.0 | B3 domain-containing transcription factor NGA1 | ||||
Refseq | XP_028219137.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028219138.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028219139.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028219140.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Swissprot | O82799 | 4e-79 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0B2PV20 | 0.0 | A0A0B2PV20_GLYSO; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | I1NCS4 | 0.0 | I1NCS4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G45090.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-66 | B3 family protein |