PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 48935.3 Da PI: 5.4114 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.7 | 9.8e-09 | 349 | 389 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+riN+++ L++l+P K++ a++L +A +Y+k L KHN11327.1 349 ARHRRERINEKIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 389 599*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.364 | 340 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 345 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-13 | 346 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.23E-11 | 346 | 394 | No hit | No description |
SMART | SM00353 | 1.2E-13 | 346 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-6 | 350 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MDGLSWDASQ LWSTIQQPPD FEGGYSMPPN VLNQIQEMQK AQTGHAYSNS ERGIYHSAGA 60 TTTSSEMMDV MQKQDTNLSQ HVSIMQVKPA GAGASWGETL TSQSYPSLSV NRPHSMNLIS 120 NYMPDFYMAH QQQQQQQQQQ QLESFDCLIS ATNSNTDITS VEDDDGISMI LSDCGNLWSN 180 FSYGSAASTG ESESNASNGR NKDMQCSPVN IEVDETVSQT VESEANCSKR SHAHDQSKMI 240 KVGDSCFSIV QNSSPIEEGG FRLVSDINQP ECKKSRWDMS SSSNNINFQQ PNSSISSSIE 300 EPDPEAIAQM KEMIYRAAAF RPVNFGLEVA EKPKRKNVKI STDPQTVAAR HRRERINEKI 360 RVLQKLVPGG SKMDTASMLD EAANYLKFLR SQVKALESLG NKVDAMNCPP TSIAFSFNPS 420 FPMQTPPLCH IHHSHGVKQN NPA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11327.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533026.1 | 0.0 | transcription factor bHLH87 | ||||
Refseq | XP_028244468.1 | 0.0 | transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 2e-85 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A445JHB4 | 0.0 | A0A445JHB4_GLYSO; Transcription factor bHLH87 isoform A | ||||
TrEMBL | K7L7Q6 | 0.0 | K7L7Q6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G21130.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 7e-81 | bHLH family protein |
Publications ? help Back to Top | |||
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