PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11215.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 319aa    MW: 35317.7 Da    PI: 8.5615
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11215.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.2e-19233266134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  KHN11215.1 233 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 266
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-14226288No hitNo description
SMARTSM004012.6E-17227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14231264IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.04E-15232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKDSWFFDNN FNGLSDEIFD DVINFFDFPL EDVDANGVEE DWDAQLKCLE DPRFDVYSAS  60
SAGLCAETQN EKPQLGMKLS ASSNGISPIK QLAKAPGPAY GKTIPHQNVT SNGKDLHQFQ  120
TYTYSPVSVF ESSSSSSVEN SNFDRPVIPV KRARSKRQRP SNFSPLFSIP LIVNLPAVRK  180
DQRTAASDSD FGTNVAGNLS NKVKKQRKKD LSLLSDVEMT RSSSPESGPP RKCMHCEVTK  240
TPQWREGPMG PKTLCNACGV RYRSGRLFPE YRPAASPTFV ASLHSNCHKK VVEMRSRVIQ  300
EPVRCSMLAS SNLHGNSVG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992130.0BT099213.1 Soybean clone JCVI-FLGm-23B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540186.10.0GATA transcription factor 11 isoform X1
RefseqXP_028195023.10.0GATA transcription factor 11-like isoform X1
TrEMBLA0A445HRP00.0A0A445HRP0_GLYSO; GATA transcription factor 10 isoform A
TrEMBLI1LTK10.0I1LTK1_SOYBN; Uncharacterized protein
STRINGGLYMA12G29730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-51GATA transcription factor 11