PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11103.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 317aa    MW: 35736.3 Da    PI: 8.9017
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11103.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-32109163459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +rY+eClkNhAas+Ggh++DGCgEfmp+ geegt++++kCaAC+CHRnFHR+e+++
   KHN11103.1 109 FRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESFKCAACECHRNFHRKEPHQ 163
                  79*************************8.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-20109160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-29109161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-30110160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.751111160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.5E-19241314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29241315IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-26253310IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDMREQDKVI EMPSTLDYNN SSSSPKLSSP IGERCDQLPP HQSHTLVFTD PPQTSSHHHN  60
LYPPSLPPNP LQLPQPHHRP RRDPDPSPII SPPRTTPPQP QPHTTTTLFR YRECLKNHAA  120
SMGGHVTDGC GEFMPNGEEG TPESFKCAAC ECHRNFHRKE PHQGVVLESQ LLQHVLNKNS  180
RNINILHSPH SHHVLHGVVG GPVQPVMLGF GGSGPAESSS EDLNMFQTLD HRGGGNLLSS  240
SVQQPPLSSS SSKKRFRTKF TQQQKDRMME FAEKLGWKIQ KQDEQELHQF CSQVGVRRQV  300
FKVWMHNSKQ AMKKKQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-222523111675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-84AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548885.20.0zinc-finger homeodomain protein 6
RefseqXP_028206813.10.0zinc-finger homeodomain protein 6-like
TrEMBLA0A445GID40.0A0A445GID4_GLYSO; Zinc-finger homeodomain protein 6
STRINGGLYMA16G25280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-56homeobox protein 24
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]