PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 228aa    MW: 25908.1 Da    PI: 9.4891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10964.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.4e-11109150351
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  KHN10964.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTLGSQEEAAHLYDRAAF 150
                 79**98..47*********4.....5********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-8108153IPR016177DNA-binding domain
SMARTSM003803.3E-4108165IPR001471AP2/ERF domain
PfamPF008472.9E-6108151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-6111159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGNSSFV TPLPLYCENL SGFENSNQQA KPKSEQPALS DDATNPDSNN  60
VVQEEPGSSN ASGSSSSKEQ LIQQITGPPI KRRKRHRRKN LHNQEQCIMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTLGSQEE AAHLYDRAAF MCGREPNFEL PEEEKRDLSK FKWDEFLAMT  180
RQAITRKKHK RRLSPGPGNS HDMLPLSKDD WDTKQGVIED AEQETSVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192RKKHKRRL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909350.0BT090935.1 Soybean clone JCVI-FLGm-5P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532270.11e-172ethylene-responsive transcription factor-like protein At4g13040 isoform X4
RefseqXP_028246369.11e-172ethylene-responsive transcription factor-like protein At4g13040 isoform X4
SwissprotQ56XP99e-44ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0B2PTH91e-170A0A0B2PTH9_GLYSO; Ethylene-responsive transcription factor-like protein
TrEMBLI1KZ381e-170I1KZ38_SOYBN; Uncharacterized protein
STRINGGLYMA08G46250.41e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.18e-46ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]