PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10946.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 581aa    MW: 63147.1 Da    PI: 6.6001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10946.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.4e-09396443455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KHN10946.1 396 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 443
                 79************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-17390461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16395460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6396443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-10396447No hitNo description
SMARTSM003531.6E-10398448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MENQFFLNAG VPPQLHFEPS PHHHHHHLCP PPSWQSSLSS AMDVQVTVLN CSTEQNPDCF  60
YNNTPTWDKS TDHHGLQFDS ALSSMVSSPA ASNSNMSSEN FVIRELIGKL GNIGAGSDEI  120
EISPHSQPLV GASSYINCNN NSTNTSCYST PLSSSPKVNM NKIPTMVKHL VKEGMPLSLG  180
TSTSLNSTVA EFSADPGFAE RAAKLSCFGS RSFNGRTTQL CLNIAELAQR SSPLVENGKK  240
QLPRVSSSPS LKVLGSQMGT QENKNSPLQD LMEVANSQEE SAISEQTPNG DTGEKPSPYV  300
NSRKRKGPSK GKAKETSTST NPPMAAEASD DSNAKRSKPN EGEGNENGQV KAEEESKGGN  360
NSNANDEKQN KSNSKPPEPP KDYIHVRARG GQATDSHSLA ERVRREKISE RMKLLQDLVP  420
GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFSIESLISK DIFQSNNSLA  480
QPIFPIDSSA PPFYGQQTQP NPAIHNNIPN GTMTHNSVDP LDTGLCQNLG MHLPHLNGFN  540
EGGFQYPITF SEDDLHTIVQ MGFGQTANRK TPIQSQSFNG K
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10946.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311130.0KT031113.1 Glycine max clone HN_CCL_101 bHLH transcription factor (Glyma08g46040.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532257.10.0transcription factor bHLH62
RefseqXP_028246340.10.0transcription factor bHLH62-like
TrEMBLA0A0B2PNE30.0A0A0B2PNE3_GLYSO; Transcription factor bHLH62
STRINGGLYMA08G46040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-92bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]