PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10929.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 283aa    MW: 31175.8 Da    PI: 6.6223
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10929.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.52.1e-141851134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                Cs+Cg+t+TplW+ gp  ++ LC+ CG  y++kg
  KHN10929.1 18 CSHCGVTHTPLWHDGPTEKPVLCSDCGSQYKLKG 51
                ****************99999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-61274IPR000679Zinc finger, GATA-type
CDDcd002027.19E-111751No hitNo description
SuperFamilySSF577164.75E-101768No hitNo description
PROSITE profilePS5011410.1321866IPR000679Zinc finger, GATA-type
PfamPF003204.4E-121852IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-91852IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
VALVGEQKHS LMVKKGPCSH CGVTHTPLWH DGPTEKPVLC SDCGSQYKLK GNLDNYFPKN  60
PVVQSFHNKF TNVNGGKHLN VDVDQLSNYV PPTTDEDNNK STPNVHCISA QATPLLRNGL  120
VDKSVLHKAS ELSPQETPAS AINAPKKLQL QPLIHKNFRN VNGGSSLNVE DEDQLSNHIT  180
PASDGDNNKS TPNVQHISPQ DFGSKIPSRK RSRVVYLTPL KECMEELWKL HRNYGRHAEE  240
RILEDNVNNF IPENEIAGLG AILLKTDHDV AASADTCESS TDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242982.10.0transcription factor stalky-like
TrEMBLA0A0B2PTE20.0A0A0B2PTE2_GLYSO; GATA transcription factor 26 (Fragment)
STRINGGLYMA08G45835.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3573022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-17GATA transcription factor 26
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]