PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10918.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 115aa MW: 13089.2 Da PI: 10.8162 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81 | 2.1e-25 | 11 | 100 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+++GF vr+ + ++ +g++ r++ C+k+g++ ++ e++ r++ r gCka++ vk+ek+gkw+vt+++++HnH+l KHN10918.1 11 EFYVDYARRIGFVVRIMQRRRFGIDGRTLARRLGCNKQGFSPNNMGILGPEKKLRPSAREGCKATILVKLEKSGKWVVTRFVKDHNHPLI 100 6*******************************************9999****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-23 | 11 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MEFDSEEDAR EFYVDYARRI GFVVRIMQRR RFGIDGRTLA RRLGCNKQGF SPNNMGILGP 60 EKKLRPSARE GCKATILVKL EKSGKWVVTR FVKDHNHPLI ATANGFSTAV SFLLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10918.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-112 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246960.1 | 1e-80 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_028246961.1 | 4e-81 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A0B2PT28 | 6e-80 | A0A0B2PT28_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A445JP10 | 9e-80 | A0A445JP10_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform C | ||||
TrEMBL | A0A445JP59 | 2e-79 | A0A445JP59_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A | ||||
STRING | GLYMA18G24443.1 | 1e-69 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.2 | 1e-47 | FAR1 family protein |
Publications ? help Back to Top | |||
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