PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10918.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 115aa    MW: 13089.2 Da    PI: 10.8162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10918.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1812.1e-2511100190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY +YA+++GF vr+ + ++   +g++  r++ C+k+g++ ++      e++ r++ r gCka++ vk+ek+gkw+vt+++++HnH+l 
  KHN10918.1  11 EFYVDYARRIGFVVRIMQRRRFGIDGRTLARRLGCNKQGFSPNNMGILGPEKKLRPSAREGCKATILVKLEKSGKWVVTRFVKDHNHPLI 100
                 6*******************************************9999****************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2311100IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEFDSEEDAR EFYVDYARRI GFVVRIMQRR RFGIDGRTLA RRLGCNKQGF SPNNMGILGP  60
EKKLRPSARE GCKATILVKL EKSGKWVVTR FVKDHNHPLI ATANGFSTAV SFLLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-112AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246960.11e-80protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_028246961.14e-81protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A0B2PT286e-80A0A0B2PT28_GLYSO; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A445JP109e-80A0A445JP10_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform C
TrEMBLA0A445JP592e-79A0A445JP59_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A
STRINGGLYMA18G24443.11e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.21e-47FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]