PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20173 Da PI: 9.5231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.4e-16 | 37 | 82 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 y+GVr ++ +g+++AeIrdp+ ng r+++g+f +aeeAa a+++a+ KHN10733.1 37 YRGVRSRP-WGKFAAEIRDPTRNG--VRVWIGTFVSAEEAALAYDQAAF 82 9****999.**********98887..*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.325 | 36 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-31 | 36 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 36 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 36 | 95 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.68E-26 | 37 | 93 | No hit | No description |
Pfam | PF00847 | 1.7E-10 | 37 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MESQEITSNI TCDGHVEEKY SPPPSLLDGS KREKRTYRGV RSRPWGKFAA EIRDPTRNGV 60 RVWIGTFVSA EEAALAYDQA AFLTRGVLAT LNFSVQVVME SLQDMGFKAL KNDLSPVLAL 120 KRMHVTRTKS RASRSGNKKV KRACGSNGKW DTSTQNLLVL EDLGPEYLDQ LLSFTCPGSW 180 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 35 | 97 | 4 | 66 | ATERF1 |
3gcc_A | 5e-26 | 35 | 97 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10733.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095843 | 0.0 | BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241445.1 | 1e-134 | ethylene-responsive transcription factor 15-like | ||||
Refseq | XP_028225580.1 | 1e-134 | ethylene-responsive transcription factor 15-like | ||||
Swissprot | Q8VYM0 | 5e-44 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A445LCM7 | 1e-132 | A0A445LCM7_GLYSO; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | C6TE23 | 1e-133 | C6TE23_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G31920.1 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 2e-36 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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