PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 756aa MW: 84274 Da PI: 6.1703 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00016 | 583 | 620 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le+A++++ Lq KHN10729.1 583 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHLLFLQ 620 67799************77......777778*********9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.9E-36 | 5 | 166 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00178 | 563 | 620 | No hit | No description |
PROSITE profile | PS50888 | 10.931 | 570 | 619 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-5 | 583 | 625 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-4 | 583 | 624 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MGTNLHQVLR SLCLNTHWNY AIFWKLKHRA RMILTWEDAY YSNPDDYDSS ENKHCQKTLE 60 QIGCGKFSHS ALELAVAKMS YHAYSLGEGI VGQVAVTGKH RWICADNQVA GSGLSFEFAD 120 GWQSQFSAGI RTIAVVAVVP LGVVQLGSLN KVIEDMEFVT HIRNLFLSTQ NYSILRPSQI 180 QGSLKSSSEL DTLKENLSSD IMPTCFYDTQ KSMKSETADV LMPLQCSGTG RNYTPSAHEK 240 MSDNVAKQEG PELYNDESSI LLQSISNMMN VDCKEFEEMK PLYGMKYEGG SSGDCKDMRL 300 ESEKNVSSYL NDFVTDNASF NDLICPSEKV RVDSACFPSV FLDTVVCESD KLHYADINQK 360 GALNFAQPSE ANSQQHIEKS KFHTEPCYKD ISDFQTEPCY KDASQMLNFP AGCELHEALG 420 PAFSKVGKCF DWPTQVNQEM KPVEMSDEIS TSQLTSESCP EHLLEAMLVN INHSNNDVNS 480 ELSFCTSKQS AMASAKNHEA SIHNVHTINS EGYLMDQLSL VREDKHHSLS SSSGICGVMS 540 SKGVSSTFHS SNSGQLERSS EPSKNSKKRA RPGESCRPRP RDRQLIQDRI KELRELVPNG 600 AKCSIDSLLE RAIKHLLFLQ SITKHADKLT DFADTKSKLH HKEADILGSS SYDQGSSWAM 660 EVGGHLKVHS ILVENLGKNG QMLVEMLCEE CSHFLEIAEA IRSLGLTILK GATKAHGEKI 720 WICFVVEGQN NKNVHRLDIL WPLVQILQSK STVYSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10729.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028225575.1 | 0.0 | transcription factor EMB1444-like isoform X2 | ||||
TrEMBL | A0A445LC90 | 0.0 | A0A445LC90_GLYSO; Transcription factor EMB1444 isoform A | ||||
STRING | GLYMA03G31876.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5027 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 1e-141 | conserved peptide upstream open reading frame 7 |
Publications ? help Back to Top | |||
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