PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10713.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 341aa    MW: 38297.4 Da    PI: 9.97
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10713.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31272330360
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                 D y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ e+p+++++tYeg+Hnh+k
  KHN10713.1 272 DDYSWRKYGQKPIKGSPHPRGYYKCSSTrGCPARKHVERCLEEPSMLIVTYEGDHNHPK 330
                 99************************999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.1E-16223268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33257330IPR003657WRKY domain
PROSITE profilePS5081130.205265331IPR003657WRKY domain
SuperFamilySSF1182908.11E-27268330IPR003657WRKY domain
SMARTSM007747.6E-38270330IPR003657WRKY domain
PfamPF031064.3E-27272329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDVEEANRA AVESCHRVLS MMSQPGNEVH CRNLMVETGG AIVRFKKVVS LLSSGLGHAR  60
VRKHKKLQIP FSENILLDNQ ICKTDHHSKC LQFPHTIFTE NSVQGLGQTV RNSIYMMGNP  120
SLELSSNERS PLNLTRQTSA THYHFLQQQQ MKHQAEMMFR RNNSVVNLNF DSSSCTPSMS  180
SSTRSFISSL SIDGSVANMD GNGSAFHLLG AAHSSYQNSQ QQKRKCSARG DEGSVKCGSS  240
ARCHCSKKRK HRVKRSVKVP ATSNKLADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSTR  300
GCPARKHVER CLEEPSMLIV TYEGDHNHPK LQHNPQIREL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20263328771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10713.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353300.0AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629302.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 21
SwissprotO043361e-113WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A445LCH70.0A0A445LCH7_GLYSO; Putative WRKY transcription factor 21 isoform A
TrEMBLI1JP030.0I1JP03_SOYBN; Uncharacterized protein
STRINGGLYMA03G31630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-85WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]