PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28612.2 Da PI: 9.83 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.3 | 4.9e-08 | 12 | 95 | 7 | 90 |
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+e GF ++ +s +s +g+ C ++g+ + +kk+ rr++ + ++gC kl+ k + w+v+ + HnHela KHN10555.1 12 AHENGFVAVIIRSDTStGSKGRSSFVLIGCERSGEYRCRKKE--FFRRNNGTRKCGCPFKLRGKPVVgGQGWMVKLMWGIHNHELA 95 9999**99999888882344444555556*********9998..9999****************9998999*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.0E-6 | 11 | 95 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-8 | 208 | 247 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0004491 | Molecular Function | methylmalonate-semialdehyde dehydrogenase (acylating) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
QDDVLQWAQF VAHENGFVAV IIRSDTSTGS KGRSSFVLIG CERSGEYRCR KKEFFRRNNG 60 TRKCGCPFKL RGKPVVGGQG WMVKLMWGIH NHELAKSLVG HPYAGRLTKA EKTLIADMTK 120 SMVKPRNILL TLKEHNANSC TTIKQIYNER SAFRSSIKGS DIEMQHLMKL LEWDQYIHWH 180 RLKDEDVVHC IFWCHPDVVK LVNACNLVFL IDNTYKTNRY RLPLLDFVGV KPTWMTFSAG 240 FAYLEGER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10555.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235233 | 0.0 | AC235233.1 Glycine max strain Williams 82 clone GM_WBb0027P13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028242214.1 | 1e-157 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B2PN70 | 0.0 | A0A0B2PN70_GLYSO; Protein FAR1-RELATED SEQUENCE 5 (Fragment) | ||||
STRING | XP_007139082.1 | 9e-90 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF180 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-10 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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