PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 79304.9 Da PI: 6.8128 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 21 | 76 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k KHN10515.1 21 RKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 76 789999***********************************************998 PP | |||||||
2 | START | 170.8 | 9.2e-54 | 224 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 +a a++e++++++ +ep+W ks +s+ +d +k+ + ++ea+r+sgvv ++ lv ++d + +W + ++ a t++vis KHN10515.1 224 IASNAMEEFLRLVQTNEPLWLKSNvdrrdvlSSDAYDRMFSKPNTRSKnpnVRIEASRDSGVVLLNSLALVDMFMDPN-KWIQLFPtivsVARTIQVIS 321 67899*******************9999777777777777777554338999**************************.99999999999********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS.XX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr.lp 177 sg g lqlm++elq+lsplv+ R+f+f+Ry++q ++g+w+++dvS d +q+ ++ R+++ pSg+li+++++ghsk+tw+ehv+ +++ lp KHN10515.1 322 SGvmgscsGSLQLMYQELQVLSPLVStREFYFLRYCQQIEQGTWAVMDVSYDFPQDSH-FAPQFRSHRCPSGCLIQDMPDGHSKITWIEHVEIEDKtLP 419 ********************************************************99.8*********************************876267 PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h l+r l+ sg+a+ga +w+ tlqr ce+ KHN10515.1 420 HRLYRNLIYSGMAFGAERWLTTLQRMCER 448 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-20 | 6 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 6 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 19 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.35E-19 | 20 | 79 | No hit | No description |
Pfam | PF00046 | 9.4E-18 | 21 | 76 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 51.165 | 214 | 451 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.81E-36 | 215 | 449 | No hit | No description |
CDD | cd08875 | 5.27E-113 | 218 | 447 | No hit | No description |
SMART | SM00234 | 2.1E-45 | 223 | 448 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.8E-10 | 224 | 431 | IPR023393 | START-like domain |
Pfam | PF01852 | 5.7E-46 | 224 | 448 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.46E-24 | 469 | 706 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MEYGGSQSPG EQDGSDSQER RKRYHRHTAN QIQRLESMFK ECPHPDEKQR LQLSRELGLA 60 PRQIKFWFQN RRTQMKAQHE RADNCALRAD NDKIRCENIA IREALKNVIC PSCGGPPLND 120 DSYFNDHKLR LENAHLKEEL DRVSSIAAKY IGRPISQLPP VQPIHISSLD LSMASFGNQG 180 MVGPAPAPSL NLDLLPAGTS SSMPNLPYQP PCLSDMDKSL MSDIASNAME EFLRLVQTNE 240 PLWLKSNVDR RDVLSSDAYD RMFSKPNTRS KNPNVRIEAS RDSGVVLLNS LALVDMFMDP 300 NKWIQLFPTI VSVARTIQVI SSGVMGSCSG SLQLMYQELQ VLSPLVSTRE FYFLRYCQQI 360 EQGTWAVMDV SYDFPQDSHF APQFRSHRCP SGCLIQDMPD GHSKITWIEH VEIEDKTLPH 420 RLYRNLIYSG MAFGAERWLT TLQRMCERFT YLMATSNPTR DNLGGVISSP EGKRSMMKLA 480 QRMVTDFCAS ISTSSGHRWT TLSGLNEIVV RVTVHKSSDP GQPNGVVLSA ATTIWLPTPP 540 HTVFNFFKDE NKRPQWDVLS NGNAVQEVAN IANGLHPGNC ISVLRAFNNS QNMLILQESC 600 IDSYGSLVVY CPVDLPSINT AVSGEDPSYI PLLPNGFTIL PDGQPDQEGD GASTSSNTNR 660 NIARSGGSLV TIAFQILVSS LPSAKVNMES VTTVNNLIGS TVQQIKSSLS CPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10515.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-126 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524332.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Refseq | XP_028234107.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A0B2PN29 | 0.0 | A0A0B2PN29_GLYSO; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | I1K583 | 0.0 | I1K583_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G33520.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |