PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 21574.6 Da PI: 8.1005 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2e-12 | 8 | 57 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h+e Er+RR+++ + ++Lr+llP ++K s ++ + +A++YI++Lq KHN10477.1 8 MHKETERQRRQEMGKLCATLRSLLPLeY---IKGKRSTSDYVNEAMNYINHLQ 57 7*************************77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.94E-11 | 2 | 61 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-16 | 3 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.459 | 4 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 6 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-10 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-5 | 10 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDENKKWMHK ETERQRRQEM GKLCATLRSL LPLEYIKGKR STSDYVNEAM NYINHLQNKV 60 KQLQAKRDEL VKVSNLKSNI CSENESSSSS TTHLPPLVSV HPFPGGLEIM CGYSFGKSVF 120 PMSRVLDILL KEGINVVSTT SIRRDGRFIH TIRSEDPNHL NMTGADYSEL QIKLTEAISL 180 QETLPEHEN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10477.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092739 | 0.0 | BT092739.1 Soybean clone JCVI-FLGm-11L13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534028.1 | 1e-140 | transcription factor bHLH118 isoform X1 | ||||
Refseq | XP_006587371.1 | 1e-140 | transcription factor bHLH118 isoform X2 | ||||
Refseq | XP_028180241.1 | 1e-140 | transcription factor bHLH118-like isoform X1 | ||||
Refseq | XP_028180242.1 | 1e-140 | transcription factor bHLH118-like isoform X2 | ||||
TrEMBL | A0A445J168 | 1e-138 | A0A445J168_GLYSO; Transcription factor bHLH126 (Fragment) | ||||
STRING | GLYMA09G27610.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 2e-31 | bHLH family protein |
Publications ? help Back to Top | |||
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