PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10475.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 31426.5 Da PI: 8.4918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.2e-13 | 101 | 153 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h+e+Er+RR+++ + ++ Lr+llP + ++K s ++ +Av+YIk++q KHN10475.1 101 KKMIHKEIERQRRQEMATFYASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHMQ 153 5788*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-13 | 99 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.503 | 100 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.51E-9 | 100 | 154 | No hit | No description |
Pfam | PF00010 | 8.5E-11 | 101 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-10 | 102 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-6 | 106 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MNLLPSAPIS KVDDSLEHSL SFESTMFPLQ RGNELVIQFS NSPHHHLQHK MSQDLILDDY 60 ASLDANDSNQ KFSTSSISQP TKKLFYGANK KNHDYSNEHK KKMIHKEIER QRRQEMATFY 120 ASLRSLLPLE FIKGKRSISD HMNEAVNYIK HMQKHIKELG AKRDELKKLS NHSNNMENNH 180 EGLHTSCNFT VHEKNGIMGI EITSVFREEK PKISKLLQFL TEEGLEVVSF FSTEVNGRLL 240 HSVQCEVNHS NSVDPSELRK KVSKAFSTFR CSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10475.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 3e-98 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028179685.1 | 0.0 | transcription factor bHLH118-like | ||||
TrEMBL | A0A0B2PMY5 | 0.0 | A0A0B2PMY5_GLYSO; Transcription factor bHLH118 | ||||
STRING | GLYMA09G27630.6 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 5e-34 | bHLH family protein |
Publications ? help Back to Top | |||
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