PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN10418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 43108.1 Da PI: 7.1098 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 142 | 4.7e-44 | 121 | 272 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas......ns 85 k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +ik+l++ s+ss sece +ss +++ n KHN10418.1 121 SKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREktsvvggggkSASSTSECEGVSSLDEVAvstggvN- 218 69*************************************************************99999999876666678833333333332333331. PP TCP 86 ssg.....kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135 + + ++ + +k++ +++++++++kesr+kar+rarertrekmr++ + KHN10418.1 219 --NeeqerETVPNMMkRRKSKVCRKSAFNAIDKESREKARERARERTREKMRTRRV 272 ..0334553333333233444444555588888*******************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-46 | 121 | 269 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.474 | 122 | 180 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.072 | 249 | 266 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MYSSNTFLNG NDLISYPNQP FCFRPFSFES NPTYNFSKEE ANSNYALPPP PPPPPLSFFQ 60 SPFDENIFLE HHHHDLLLLH QYSLTDSGVS KNLEVVAEIS PIPCPEQGGI AMEHTPRKRS 120 SKRDRHSKIN TARGLRDRRM RLSLEVAKRF FGLQDMLGFD KASKTVEWLL NQAKGEIKQL 180 AREKTSVVGG GGKSASSTSE CEGVSSLDEV AVSTGGVNNE EQERETVPNM MKRRKSKVCR 240 KSAFNAIDKE SREKARERAR ERTREKMRTR RVLVSDASNL NRLSSWNPFE TVEDSAGTTH 300 HPSLDVHLHE ADQEPISSHN VKEHNLGEDM AHEDNSLALM NKWSPTMLFN SLHNSGILQE 360 HQFAEFQSLG KQWEAYSNQI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN10418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550846.2 | 0.0 | transcription factor TCP12 | ||||
Refseq | XP_014624955.1 | 0.0 | transcription factor TCP12 | ||||
Refseq | XP_028210359.1 | 0.0 | transcription factor TCP12-like | ||||
TrEMBL | A0A0B2PRP4 | 0.0 | A0A0B2PRP4_GLYSO; Transcription factor TB1 | ||||
TrEMBL | K7MLA9 | 0.0 | K7MLA9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G13065.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-21 | TCP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|