PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10339.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 597aa    MW: 65232.6 Da    PI: 7.2346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10339.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284.1e-09390437455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KHN10339.1 390 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 437
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17384455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-10384441No hitNo description
PROSITE profilePS5088815.663386436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16386454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6390437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MENQFFLNAG VPPQLHFEPS PHGHQPCPPP SWQSSLSSAM DVQVTVLNCS TEQTQDCFYN  60
TTPTWDKSTD HGLQFDSALS SMVSSPAASN SNISSENFVI RELIGKLGNI GGGGGSDEIS  120
PHSQPLVGAS FYINCNNNST NTSCYSTPLS SPPKVNTIKI PTMVNHLVKE GMPPSLETPM  180
SLNSTVAKFS ADPGFAERAA KFSCFGSRSL NGRTTQLGLN NAELAQRSSL VENGKRLPRV  240
SSSPSLKVLE SQMGTQENKN SRLQDLMELA NSQEESTISE QTPNGDTGVK PSPYVNSRKR  300
KGPSKGKAKE TSASINPPMA AEASEDWNAK RSKPNAGEGN ENCQVKAEEE SKGGNSNAND  360
EKQNKSNSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT  420
GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFSIES LISKDIFQSN NSLAHPIFLI  480
DSSAPPFYGQ HPQPNPAVHN NIPNGTMTHN SVDPLDTGLC QNLGMHLPHL NDFNEGGSQY  540
AKPFSEDDLH TIIQMGFGQN ANRITPIQSQ SFNAWRNRKT TAVHNKKGFN LNDPLNY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10339.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311130.0KT031113.1 Glycine max clone HN_CCL_101 bHLH transcription factor (Glyma08g46040.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215667.10.0transcription factor bHLH62-like
TrEMBLA0A0B2PRP30.0A0A0B2PRP3_GLYSO; Transcription factor bHLH62
STRINGGLYMA18G32560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-92bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]