PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10215.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 521aa    MW: 57491 Da    PI: 8.0911
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10215.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.76.5e-1565103241
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 ++k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ +
  KHN10215.1  65 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVD 103
                 89**************************.********986 PP
2TCR51.12.6e-16147186140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  KHN10215.1 147 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 186
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-1864104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.09465187IPR005172CRC domain
PfamPF036385.9E-1266101IPR005172CRC domain
SMARTSM011148.4E-20147188IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-13150185IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
PWLYSEAQEQ QPGLYSPRPK LVSPVRRIPH PVVKFPVKVL QVVKPESPRS QPRCNVELKD  60
TTPKKQKQCN CKNSRCLKLY CECFAAGIYC DGCNCVNCHN NVDNEAARQE AVGITLERNP  120
NAFRPKIASS PQEQRDSKEC EIKVIGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM  180
DCKNFEGSDE RIAIFHKDYN LVHMKQAANA TISGAVGSSG YGTHITPKKR KNQEMFPGKS  240
AMDQTVNMTA QYLQEIDPMA SSPSSLSDSF ISDPSNTRIS GSSRSTYRSV LADVLKPNNV  300
KNLCSLFVVL SRVAAKTNAE MRGKVDQQTK TGNFEASVAS SAKSLQETRD VHQPACDDHV  360
NKDEAEAVDV AHYNRPLSPE TLALMCDEQD DMLFGNCSAD GVACNSTFQN MIQKSFNSDG  420
CTDVYREQER LILTKFLDIL RGLVTHGSIK ETMCSSLTKK GERSKKEPAD NGNNGAETNV  480
GSEKGIQSNC FANYLIPSIA KISQTNYAIT NGHGNNDLSL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-30571962132Protein lin-54 homolog
5fd3_B1e-30571962132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523732.20.0protein tesmin/TSO1-like CXC 5
RefseqXP_028228213.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-131TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445KXD50.0A0A445KXD5_GLYSO; Protein tesmin/TSO1-like CXC 5 isoform A
TrEMBLK7KIV60.0K7KIV6_SOYBN; Uncharacterized protein
STRINGGLYMA04G08670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-113Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]