PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10161.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 303aa    MW: 34416 Da    PI: 7.8683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10161.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13100151155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  KHN10161.1 100 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                 799***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.15E-1298155No hitNo description
SuperFamilySSF474593.66E-1698168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1398154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58999150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTLETLQSNE FSNFIIYDTI SATPFSSHGS PEASFLESFV NYQEQHDHPT FDNCAMRTRK  60
REASEPESIG RRQNSVAVQG RKKRRRKPRV CKNTEEAETQ RITHITVERN RRKQMNEHLA  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQSLEAR KLQLLHQEVA QTNENTAISK  180
LMQPPFAHCF SYPQYTWSQT PNKYTSKTKA AIADIEVTLI ETHANLRILT RRSCHGQLTK  240
LVAGFQTLCL TVLHLNVTTI DPLVFYSFSA KVEEGFQLGS VDGIATAVHH LLARIEEEAS  300
LCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRK
28087RKKRRRKP
38186KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10161.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943130.0BT094313.1 Soybean clone JCVI-FLGm-24B24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634765.10.0transcription factor bHLH71 isoform X1
RefseqXP_014634766.10.0transcription factor bHLH71 isoform X1
RefseqXP_028245443.10.0transcription factor bHLH71-like isoform X1
SwissprotQ9C7T43e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0B2PLB90.0A0A0B2PLB9_GLYSO; Transcription factor bHLH96-like protein
STRINGGLYMA08G36590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]